AMCG00010392


Basic Information

Item Value
gene id AMCG00010392
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27919578 ~ 27933573 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010392
TTTATATCCGTCAAAGCGGCTGGTGGGGAAGCGCGGCCAGCCGTCCAATCCCAGGCTGCAGTGCTGGCACCGTGTCTGCCTGCAAGCCGGCTTCCGTTTCTTTTTCCTGACTTCCTGgtggttttgtgtgtttattgagcTCCAGACTTGAGCACAGTTGAATGGTGGACCACTTTCACTTCAGGATTATGGACGTTGTATATGTACAATATTAGAATCGCGGGTGATAGTACTGCATTAAGAACAACATTAGGCCTCTCAAGCAGGCCCAGCGCCTTTGGCTGCGCAGTAGTCGTGTGGGGGGAAAATATTTGTGATGGGAGGCTTGGGAAACAGTCGGCGAGGTGGGAGATCTCCTCCACTCCTAATTGTTGCTTTAATTGCCTGCTTGGTCTTTTTGGGATTCAACTACTGGATATCAAACTCTAGGAATATAGAACTCCAGACTCGGGTATATGAGCTTGAAGGAAAAGTGAGGCGGGCAGCAGCAGAGAGGGCTGCGGTCGAACTGAAGAAAAATGAGTTCCACGAGCAGCTCGGCAGGCAGAATGAACAAATGAATCGGATCGAATCTTTGCATCAGCAACAGCTGGTGAAGGCTCAAGTGTCctggaaagaagaaaaggaGAACTTGCAGTTCAACATTTCTTCAAGTTTGAAAGCTATCCAGACAATGAAAGatcAGTTGAAAGATTTGGGGAAATTACAGAAGGGACTTCAGGAGTGTCAAGGCAACCAGAGTAGCCTTCTGAAAAAACTAACATATGACATGACCCAGTGCAATGCCCAGATCATAGAGCTGAAGGAGGAGCACATCGAGAAGCTTTCTGCGCTCAAAAAGGAGATTCAGCAAAAGACAGAGAAGAAACCTGCAGCTGATGTCAAAGCCCATATGCCTGAAGCAGTTCCCACAGAGGTAAAAAGCAAGGTTGATGAAATTAGAGATACAGCAAAGCGAGGACAGGAAGAGACGCCTAAAGTTACTGTCCAGTTGCAGAACACAAGCCACGtggaagaacaaaataaaataaaaactttaactCCGAAGCCAAAATTCACCGAGTTTGAGACCAATGAGATTCCAGGCAGTGACAAAAATGATGTTCAGTTGACACAAGCTGGGAAGGAAGTTAAGAACCAGccagaagaaaaggaaaaaacacaacctACAGCAGTGAAAGAGAAGGACAACACTCCGGAGAGTCAGTTGGACCATGAAGATGAGGAAGAAACGGATGACCTTGGAAATTACCTCCAGAAAGGCAATGGaactgaggaggaggaaggggactTGGAGGGAGAGCAATTCATTCAGAATGAGCAGATCTTCGATGATTCGCCCAATGGAGAAGTACCTGGAAATCTGGATAACGAAAAATCTGCAGTGGTGATGGGAAACGAGCCTGCGGACTACAATGGAGATGAGGACAATGTGGGGGAGTTTGAGGCAGACAAACAGGCCGAACTTGCTGAGAACGCAGGTACAAATGAAAAGGATCTGATGGATATAGATATTTAGTTGTTTGACATTTGAGGAATGTTTCTGAGGATgccagtaaataaaaacaaaatcggTTGCACTGTCAATATAAATGACTGCAGTAAAATAGATCTGAGCTTCCAAGTGCTTTCTATAGGGTCAGGAGTGCAACGTGTTACTTCTGTTGAAGCACAATACTGTAgggtaaacaacaacaacaacaacacattgtaGCATAATGTCGCACAGCCTTAAATAACGAATGAACTGTCCAAAttgaatgtatatttaacaGGGTTCTGAAGTAGACTGGAACATTTACTTTTTGCACTGCTGAATAAGCAATCTGTACATACAAAGTCATTCTCATTGCTCACATGAATAATCAGTGATTAAAGCTGTTGGTGTGGGAGCAAATCATTTATGTTTCTAATCAGCCTTTTTATTTCACATCATGATTACTTCTGAGAAATGGCTTGAGGATTTCTCTCGGCCTTCCGTGATTTAGAATTGTATACCCTATTATATTGCTTTTCAAATCTGAATCAGAATACATTCAAAGGAGAATGTTGCATTAAATGACATCCCCATGGTTAAGAGATTGTGAAAGATAAAGGAGTGCATCTGCCAATTGCCTAAGGACCATTCATTACCAAAATTATTGCTATCAAAGAAAGGAGGCAGAGTTCTGTGCTGTTCTATGCCACATATTGACTGGTTTAAAAAAGTATGGGTCTGGTTTGTGtgatattgaaaaaaatattcagccAATAATTGCCTCATCTCAAACTTACTGTTTATGTTGCCATTTCAGGGTATTTGGATTACATTATGCTTTAATAAAACCTCagaggttattattttattaatgtccATCCAAGACTGAATAAATGTGAACTTTTTTGTTGTAGAATATGGAGGTAGAAATATTTTAACTTATGGAAAcctattgtgtattttattttatatatgcatcACCAAATGTTTTCATGTAAATGATCAATTATACTCTTTCTGTCAAAGGAGGCTTTTTTactgggttgtgtgtgtgtggaggttcaGCGGAATCAGAACAGTTCTGCAGTACTTTGAGCTTTCACAGGTGTATTTGTCACAGCCTGTAGAGGATTTCTGTTGTCTGCCtcttgtcatttgtttttaattgttcttgTAATTGGCATGTGTTTAGAGATTACATAAATTACtcactaaaatataatttaactgATTTGTTGCAACTATACTAGATaatgaatagtttattttgtatgaataaaacaaatgtaaacctctgtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010392 True 2778 mRNA 0.41 10 27919578 27933573

Neighbor

gene id symbol gene type direction distance location
AMCG00010396 NA coding upstream 21080 27892610 ~ 27898498 (+)
AMCG00010395 NA coding upstream 52402 27851562 ~ 27867176 (+)
AMCG00010384 NA coding upstream 106005 27810408 ~ 27813573 (+)
AMCG00010390 NA coding upstream 124251 27786437 ~ 27795327 (+)
AMCG00010383 NA coding upstream 144225 27763580 ~ 27775353 (+)
AMCG00010394 NA coding downstream 25134 27958707 ~ 28013490 (+)
AMCG00010402 NA coding downstream 222683 28156256 ~ 28169012 (+)
AMCG00010404 hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375 coding downstream 258009 28191582 ~ 28206181 (+)
AMCG00010401 NA coding downstream 276439 28210012 ~ 28212808 (+)
AMCG00010403 NA coding downstream 282283 28215856 ~ 28232465 (+)
G80264 NA non-coding upstream 123288 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 630722 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 716377 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 841074 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 1002739 26916541 ~ 26916839 (+)
G80331 naa35 non-coding downstream 2593 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 87901 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 272748 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 791434 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 837654 28771227 ~ 28775463 (+)
G80326 NA other upstream 12749 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 44647 27869439 ~ 27874931 (+)
G80249 NA other upstream 362571 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1516558 26380467 ~ 26403020 (+)
G80014 NA other upstream 1893275 26012484 ~ 26026303 (+)
AMCG00010407 NA other downstream 309416 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1560990 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2832764 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4540460 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5970242 33903815 ~ 33938237 (+)

Expression


Co-expression Network