AMCG00010394



Basic Information


Item Value
gene id AMCG00010394
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27958707 ~ 28013490 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00010394
GACATCTGAAATGGTGAAGGTTCCCAGTAATTCCCGGGTCCTTACTCTCCTTGCCCAACTTGAGAAATTAAATGCAGAGTCCGTGGTGCTGGATGTGGAAAATGCGAGACATATCACATCGAAGATCCTCCATATCATCCAAACACAAGaGAAAACGAGAAAAGAAGTGATGACCAAGGGCTCCAATGGGATGGAAGTAATCTTGTCAACATTAGAGAATTGTCGAGACCTTCAAACTACACTGAATATACTATACATCCTAAATGAACTGGTCTCTGTGGGAGGTGGTCGGAGAGTTGGGGTGCTGGTATCAAAGGGGGGGACCCCAAtcctcctgcagctcctgtTAAGTGCCAGCAGAGACTCCCCACCCAGTGAGGAACTCATGGTGCAGCTGCACTCCATCCTGGCCAAAGTGGGACCAAAAGACAAGAAATTTGGCATCAAAGCCAGGATAAATGGAGCCCTGAATATTACCTTAAATTTGCTGAAGCAAAACTTGCAGAATAACAAGCTGCTTTTACCATGTCTGCAGGTTCTACGGGTTTATTCAAGCAACTCTGTAAATGCTGTGTCACTTGGCAAGAATGGAGTTGTGGAgctgatGGTTACTCTGGACACTTTATCAGCTTTGCTGAAGTCAAAAACTAATGCTCGCAGGGCAGTAGACAGGGGCTATGTTCCTTCATTGTTGTCAATTTACCAAGACTGGCACAAGCAGGACAACCGACACAGGCATATGCTAATCCGGAAAGGGATTTTAGGCTGCATCAAAAACATTACGAACATAAAGCTGGGAAGGAAGGCATTAATTGATGCAGATGGCATGAGGATTCTATACAGCACTTCTACAGAGTGCCTTCCAGTGAGAACATTGGATCCACTGATTAATACTTCAAGCCTTGTCATGCGAAAGTGTTTCCCCAAGAACCGCCTCCCAGTGCCaacaataaaaagtgtttttcacttcCACCTGCCTGTGATCCCAGCGAGCGGCCCTGTGGCACAGCTCTACAGTCTTCCTCCGGAGGTGGATGATGTAGTTGATGAAAGCGATGATAACGATGACACAGAAGCTGACACAGAGAATGACACTGAGAATGAAGATGAGGAAAAGGACCAAAATTTGCAGAATGACGATATTGAAACCGATATCAGTAAATTGTGCCCAAAGCAGGAAATTGGTCGACCACTTGAAGAGTTGAAAATGTATGAACGCTTTTTTCCAGAACTCAGCGAAAACTTTCAGGAATATAAGTTTGCTTTTGAGGAGATCAGTGCAAACACTACAGTACTGGAACCAAAGTTGCCCGGCACCATTGTTGTTCCCACAGCCGGGGATGAGCCAGCCATAGACCTCAGCTctacaaaaaaggaaaccaaactAACTACGGAAGAGCAAACAAAACCGCAGTCTCTTAACACTCAGGCAGGGGAATCTGTAAAGGCCGCAGCACCTGTGGACCTTGAGAGTATAGTAATCTCAAAGCATGACAAACACTCCCCCGATGCAAACAAACTGCTTATTTCCCAGTGCCTAAAGCATGATTTAGTCAGGGAAATGGACCGGCTGTCCATAGATGGGGAGAGTGCCTCAAACAATCTCAAGTGCTGTAATTCAACGGGCATAAATGGACAGAGATATAAGGGAGCACTCAATTCTACTACCTGTAACAAAGGCTGCCAGAATTTCTCAGGAACTAGTGGGTCTTCGGCAGAGCATTTGTCTGCTCCTCCCTGCAGCCCCAGAGGGGAGCCTGACAATGAGGATGACTGTAGCTCCCATTCCTCAGGGGAACAAGGGGTCTTGGAGGTGCCAGACACTGCTGCCTTACTCCCCTTGCATGACCCAGAACTCTACATTGAGACGGTCAAAACCACCAAATCTGTCCCCCAGTATGCTGAGGTAGCCTACCCAGATTATTTTGGTCATATTGCACCTACGTTTAAAGAGCACATCTTGGAAAGAGTgACAAAAATCTTTCAGGATATAGAACGATTGATCCATTCCAATGATATAATTGACAAAGTTGTCTACGATTTGGACTTGCCAAGCTGTCCAGTCATTGAAGACGGAGAGTCTTTGAAATTTAACTCGCAGTTTGAATCTGGAAACCTGCGTAAAGCCATTCAAGTTAGAAAGTTTGAGTATGACCTTGTTCTGAACTCTGATATAAACAGCAACCATTACCATCAGTGGTTTTACTTTGAGGTTAGTGGGATGAGGAGCGGTGTGCCGTACCGTTTCAACATCATCAACTGTGAGAAGTCCAACAGCCAGTTCAACTACGCTGGGGGTCAGAAAGGAAAATCTTACTACACGATGACCTTCACTGTGACCTTTCACCATAGGGATGATGTCTGTTACTTTGCATACCACTATCCTTACACATATTCTACTTTAAAGATGCACCTTCAGAAACTGGAGTCCATGTGCACGCCACAGATTTACTATCACCAAGACGTGCTCTGTGACACTCTGGGTGGAAACAGCTGCCCTGTTCTGACTATCACCGCAATGCCAGATTCCAAACACATTGAACAAATCTTTCAGTTTAGGAATCGTCCCTATATTTTCCTCACGGCCCGAGTGCACCCTGGAGAGACCAATGCGAGCTGGGTGATGAAAGGAACTCTGGAGTTCCTAATGAGCAGCAGTCCAGTGGCCCAGAGCCTCAGAGAGtcctacattttcaaaattgttCCCATGTTAAACCCCGACGGAGTCATCAACGGAAACCATCGATGCTCACTAAGCGGTGAAGATCTCAACCGTCAGTGGCAGAACCCAAGCCCTGATCTTCACCCCACTATTTATCATACCAAGAGCCTATTACAGTACCTAGCTGCCGTGCAGAGGACCCCATTGGTGTACTGCGATTATCACGGGCATTCCCGCAAGAAGAACGTCTTCATGTACGGCTGCAGTATCAAGGAAACAGTGTGGCAGACTAATGTGAGTGCCACCTCCAGTGAGCTGCACGAAGACCTCGGGTACAGGACTCTACCAAAGATTTTAAGCCAAATAGCCCCTGCATTTTGCATGAGCAGCTGCAGTTTTGTGGTTGAGAAGTCTAAAGAGTCCACAGCTCGTGTCGTGGTGTGGCGTGAGATTGGGGTACAGAAAAGCTACACCATGGAAAGCACTCTCTGTGGCTGCGATCAAGGGAAATATAAGAGTCTTCAGATCGGGACAaaggagctggaggagatggGTGCCAAGTTCTGTGTCGGATTGCTCCGTTTAAAAAGATTGACCTCTCCACTGGAATACAGAAATCCTTCCCACTTCCTGGATGTGGAGACGGACTTGATTGAGTCCAGCTGTAAAGTCACAAGCCCCACAACCTATGTGCTTGACGATGATGAGCCACCCTTCTTGGAGGAAGTGGACTATAGCGCGGAAAGCAATGAGGAGAATGATGCTGAACTGAACGAGAACACCGTGGACTTTGACCCCTATGTCCCAGAAGACTCGGACTCGGAGACAACCAGGAGAGACTTATTGAACTGAGCAGAGCTGCCTGCCACACTGGAATGGGATGACATGTATTTAACTGTTTCCAGCAAAGAATGTGAAAGCTTTCTCATACAGGGAGATTAAAATcaacattgtattatttctaaatgtgtgAACCCTTTCATATCCCAAGCCTTCATTCTTGGTGTATTGATGGGGGTTTGGCGATTTGAGAATGATTTgttgttcacattttgttttattgcactttatttaGGATAACAGTAGTAGGTACAACCTTCAgcataaataaacagcaaactaatgcaaaaaataCTCACTTTTTGAAGTTAAGGAATAATAGAAAGGAACTTGGATTTTCACAGCTTGTTGATGTTGAGCACCAATAGTTTAATCCTAAAGATATAGCAatgacttattttaaaaacattgatcaCACTGGagtttgcattattattaactcACTATGAGTTTAATTAATAACTGGATTCTGACTCCcccataaacaaacacacacacatcgatATTCAGGATAATTGTCATATTAATAAGTAACCAATAAATGGTAGTAGTTTTAAGAAGTGACATCTATCAACATTGCTTTTCCATGTTTAGTCATAGCTACTAcatattgcttttgtttctgcagTCACTGCATGacttcatattttgtttcagtttatttaaattgttatgcCATGTATTTGTCAAAGAAATATGTATGGTAAGATCCttgtggtgctgtgtgtgtattattgtgaAAAACAGTGCAGATCTGTACAGTATCCTATGCTGTATGTATTTCTTGGAAGAAAAaccttttaatttgattgtgaAGATAATAATTTGAAGTTTGCTATAATAAATTTTAAATGCCTGAACAATTTGCATGCTTTAATGTATTTGACAGTTAATGGCTCTTTTAACCAAATTACCTTTTGTATTATCTAGTAGTGGCCTCTGATTAGAACTGGAAAAAGGGAGATTCTACATCTTAGGAGAAAGATGGACATAGATGAGTCGAATGCACAAGAGGCCATGTTGCCTCCATCAGATCTAGACGCAGTAGAAGTCACATACCTGTAGCAACATTTTACAAAGGGAAGCATATAGAGTCGTTTACATCAGTGTATAATTGTGagtctgtattttaatatctgaCCAGTAATCatacgttgttgttttttctatagATGTATAATAGTGTGCTATTAAACATGTCTAAATATTTAACTCTGCCATTTGCACATGTAGTTGTTCTGTTACACTGGCTgacataatttttattttcacatttcaggTTAGTGTTTAAAAGGGCTATAAAACAGAATGTTCAACACTTTAGGATCTCAATATAAAGGGCCTTTATTTGCAAGTCATCTTTGTAATAATACACCAATAAACAAACGTGACACTTCATTGACACTACGTTTGCTGTTTTTTGAAGTGGCAGATGAACTCGGCTCTCCAATCTTCTCTCCTGGCACATTGATCTGTTTCTTCTTTCAAACCAAACTGGCACACAAACTGAAGTGTCAGCCCTCGGCAAAGCACTGTGTTAACACATTGAGTAGTTCATACCAAAAACAGTTACGTTTAAGTTTCTGCTTTGAGTTTTTCAAGATAGCATCAACCCTctcattaaatttaattaatctgtgttTGTAATGGCCATCTTACTTGCATTTCTTGCGTTTGGGTTTGACACTCCTCTTTTAAGACTGATATTCATACAGCACCTTCAGTATCAAGTAATCTGTAAATATGACTAAAGCCAGCAATATTAATATGGTT

Function


GO: NA

KEGG:

id description
K23435 AGTPBP1, CCP1; cytosolic carboxypeptidase protein 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00010394 True 5275 mRNA 0.42 24 27958707 28013490

Neighbor


gene id symbol gene type direction distance location
AMCG00010392 NA coding upstream 25134 27919578 ~ 27933573 (+)
AMCG00010396 NA coding upstream 60209 27892610 ~ 27898498 (+)
AMCG00010395 NA coding upstream 91531 27851562 ~ 27867176 (+)
AMCG00010384 NA coding upstream 145134 27810408 ~ 27813573 (+)
AMCG00010390 NA coding upstream 163380 27786437 ~ 27795327 (+)
AMCG00010402 NA coding downstream 142766 28156256 ~ 28169012 (+)
AMCG00010404 hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375 coding downstream 178092 28191582 ~ 28206181 (+)
AMCG00010401 NA coding downstream 196522 28210012 ~ 28212808 (+)
AMCG00010403 NA coding downstream 202366 28215856 ~ 28232465 (+)
AMCG00010400 LOC107562640 coding downstream 219454 28232944 ~ 28242085 (+)
G80331 naa35 non-coding upstream 21653 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 162417 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 669851 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 755506 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 880203 27078289 ~ 27078504 (+)
G80362 NA non-coding downstream 7984 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 192831 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 711517 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 757737 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 864334 28877824 ~ 28878359 (+)
G80326 NA other upstream 51878 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 83776 27869439 ~ 27874931 (+)
G80249 NA other upstream 401700 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1555687 26380467 ~ 26403020 (+)
G80014 NA other upstream 1932404 26012484 ~ 26026303 (+)
AMCG00010407 NA other downstream 229499 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1481073 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2752847 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4460543 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5890325 33903815 ~ 33938237 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location