AMCG00010395


Basic Information

Item Value
gene id AMCG00010395
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27851562 ~ 27867176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010395
CCGAAGTCAGGGACGCCATTTTGGATTTTTATGCGTGTTTGGTCCGGAAACCCACACTATCCTCTGCCTCGGCGGAAACGAGAAACAACAGTATGCAGCGTTTACCGAGAGTGCGGGcttgatttgaaatacaaatggaaGAGACCGGTAGACCTCGCTATTCCAAGCAAGGCAAGGAGAAAGGCAATGTGGCAGACGAGGCTGATACCTGGAGAATCCCCATGCGTACGGAAGGCCTTGATTATGGAAGATTCAGCAATAAACCAGAAAAGGGGTCCCAGAAGAAGAGCTCAACTGGGAGCTTTGCCAGCAGCCCTCGGAGAGTAGGCCAAGATGTCTTGAGTACCAGTCCTGCAGGGTTTAAAAAACTGTCTCACAGCCCCAAGCAGAAGCTGCAGGATGAGCTGAGAGATGGGTTCAGGAAGTTCCCCACACAAGACGATCACGCCAGGGATGACAACTGGAGGGAGAAGAATTTCGGCCGTGAATCAGGCCGGTGGAGGAAGGATTCCTTCCATGAGAGTGGTGAGGATGTGAGCAGGCAGCGAGATGATGGTGGAAGAGGACAAAGGCATGCTCGAAGGCAGCCGCCGAAGGAGATGAACAACGATGAGAGAGCTGAGTCTGTGACACAGTCTGCAGgtagtaaaataaaaaagagagagaggagaaggaatCAAGTTGACAGAGATGACGACAGGGATGGCACTGTTATTGATGAATCTACCTTGTCAGAAAAGGAGCTTCTGGGATTGCAACAAGCTGAAGAAAGGTTAAACAGAGATGAGATTTTCAGACTGAAAAGGCGTCCTCGTGGTTCTCCCAACTCCACGTATTCTTGCATGCTCTGTGATGTTTTACTTGAGTCTATTTCGTCAGCCCATAAGCATATTAAAGAGAAGTGGCACAAGAAGCTAGTAAGGGAAAAGCGTGAGGAGGAGATGCTCACAGCATTACTCCCACCAAATCCTTCGCAGGTGAAAGCCATTGACACAGCCATTGAAAATGTTCTAAAGAAGTATGGCTTAAGCGGTGAAGATTTAATAAGGAGGCAACAGATTGTGATGTCAATGGAGGAAATAATCAAATCGGTTTTACCTGcGTCCTATATTGACCTTGAAGCAGACTTCCACGCCAGAGTGCCTGTCTTGGTTTGCAGAGAAAAGCAAAGTGGTCTACTTTGTAAAGTGAGTGCAGGCAATGACAACGCATACCTCACAACAGAGCACCTGGCAGCTCTGGCAAATCTGGAACCCTGTCTTACTCCTCTTGTGATTGCCTTCAGACACTGGGCCAAGATCTGCCATATTGACCACCCGGAGGAAGGAGGGTTGCCCCCTTACGTGTTGGCCTTGATGGTCATTTACTTCCTTCAGCAGAGGAAAGAGCCCGTGCTCCCTGTGTATTTGGGGACGGATATTGAGGAGTTTTCTCTGAACAAACTTGTAGATTTCAGGCTTACTGGTGTGGAAGATGGTCATGCCAAGCTGGCATTTGGACCAGAATGCCAACGTGAAGTGGCCATTGGGCAGCTGTGGGTAGAAATGCTTCGTTTCTATTTACTGGAGTTCAACATGGCCGATCATGTCATCAGCATTCGTATAAAGGAGCTCTTCACGAGGGAGTCCAAGGACTGGCCTAAAAAGAGAATTGCCATAGAAGATCCTTACTCTGTGAAGAGAAATGTGGCAAGGACTCTCAACAGTCAACTCATGTATGAGTACATTCTCCATTGCTTAAAAACAACCTATAAGTATTTTGCTTCTCCTTTTAAAAAGTACGGGAAGCTGAACAAGCAAAATCACAAACGGGAAGAGTTTCAAAGCCCTGTAGCTGCACACAGTGGAAGGGAAGAGAATATGCCACCAGATCTGGATGAGTTGCGTTTGATCCAGTCAGAATTAGACGGTCTCAGCATCGACAGTCACATCATGAATGGGACGATTGTGAAGCATGTGTGTGAAGAAAGCCCGGATGCAGTTTTTCCAGAAATGGCAGGCTGTAATGCCAGTTTAACAGAAGAACTTACCTCCCTGAAAAGCGATGGTGGGCTACTCCAAGATAACTTCGACTGCATCATAGAAGAGTTAGTAATTGAAGAACCTGATGGTTATAAGCCCCGTTCCGGTGAAACGGAAAGTGGCAATGAAGAGAACGAAGCAGGAGACATAAAGGGGGAGTTGTTCTCTTTACATGGTAACCAACTGTTGGGGGAGGAGAGTGAGGACACCGACCCCACAAACTTGCCTTACTTCCAGCAAGAACTGGAGAACGAGATCGAAAGCCTTTCTGATTCAGAAGGTGGTTTGCACACGGGAACTGTGGACAGCGACGACTTGGGCCTAGAGGAATCTGGGAAACTAGACCGGGAGGATGAGTTGGGAGACTCGTTGCACCAGCTGCCAGGAACACGGAAGAGGCTCGCCTTTGAGAGCAATAACTCggatgatgaggaggaggaggaggatgtgAACCACAGAACTCACCTGGACAGCCTTACTGTGGAAGATGAACTGGAAAATATGTACACCGCTTCGGGAGAAGAGGTCCTCTCTGACGATGACGGTGGGCACAGTGTTCACGTTGAGGCTCACAGTTCTGTGAAGGAAGGCCTTAATGGCAACAGGGATTCCAGTGAGATCAACACTCCTCTGAAAGAAGGTCCCCCAAAAACCTGCTCTGTGTCTGCAGATCAGGGCCAACATGAACCTGTTTTGAGCTACGAGTTCAGTAAACTTCAGTTTACTAGAGGAAAGTCGCCCACAGTGGTATGCAGTCTGTGCAAGCATGATGGACATCTGAAACGTGACTGCCCTGAAGACTTCAAGAGGGTTGAACTTGATCCTTTACCTCCAATGACACCAAAGTTCCTTACAATACTCAACAAAGTTTGCATTCAGTGCTTCAATGATTTTTCTCCAGACCTGATAGAAGAAAAAGCTCGTGAGAACATTCTGCAGAACCTGGAAGACTTAATCAGTTATGACCTGGAAGgAGCCAAATTAAGTTTATTTGGATCTTCTAAAAATGGATTTGGCTTCAAAAAAAGTGATCTGGACATCTGCATGACATTTGAAGGAAGAGAAACCGCAGaggGTCTCCAGTGCATTGGAATAATTGACAACTTGGCTAAAGTGCTCAGGAAGCATCCAGGTCTACGAAATATACTGCCGATTACAACTGCCAAAGTTCCAATTGTAAAGTTTCTGCATGTGAGAACTGGTCTGGAAGGAGACATTAGCCTGTATAACACACTGGCTCTGCATAACACAAAACTACTTGCTGCTTATGCCAATATTGATCAAAGAGTGAAACATTTGTGCTACGCCATGAAGGTGTTTGCAAAAATATGTGACATTGGAGATGCATCAAGGGGTAGTTTGTCATCTTATGCCTACACTCTCATGGTGCTGTACTTCCTGCAACAGAGAAACCCACCCATCATTCCAGTTCTTCAGGAgATTTACGATGGCCCAAAGAAACCAGAGGTACTTGTGGATGGTTGGAACGTGTACTTCTTCAATGATCTAACCGATCTACCAAACCGGTGGCCAGAGTATAGAAAAAACACCGAAAGCGTAGGGGAGTTGTGGCTGGGATTGCTTCAGTTCTACACCGAAGAGTTTGACTTCAAGGAACATGTCATCTGTATCCGGAGAAAGAAACTGCTCACCACCTTCAAGAAGCAGTGGACATCGAAGTACATTGTTATTGAAGATCCCTTTGACCTGAACCATAACCTTGGTGCTGGATTGTCAAGAAGGATGACCAATTTTATCATGAAGGCCTTCATCAATGGGAGGAGAGTCTTTGGTTCCCCAGTTAAAGTCTTCCCCAGTGAATACACTTCTGAAATGGAGTATTTCTTTGATCCAGAAGTGTTGACAGAGGGAGAACTGGCACCAAATGACAGGTGCTGTCGAATCTGTGGAAAGATTGGACACTTCATGAAAGACTGTCCATTGCGCAGAAGATTAAGGCAGAGGCATGACCATCGAGGTCACGAGGATGCTTTTTATCAAAGGCGCCACTATGGAGACAGTGAGATTAGGAGGTCGGATGCTTTGGCCCCAAGATGGAGGGCAGAGAACCAGGTGGCGGGCAGAGAGCAGAACCCCCGACAGGCCTCCGACAAGTGGAGGAAGCAGGACGACCGAGAGTTCAGAGAGAAACGCTGCTTCATCTGTGGTTCCGAGGGACACATTAAGAAAGAGTGTCCTCAGTACAAGGGCTCTTCAGGGAGTTACAGAGCTGATGGCTCCTCCTTTTCTTCATCCCCATCTGCTCCCAGTAATTTAAAGATCTTCAAAGCAAAACAGAGTACAACTCCACAAGAGGATAAGAGAAAGCAGAAGCAGCAGAAAGTATTTCTAAGTCCTCAAGCAGGAAGCCTTGCAAGCAAGCATATGACTCAGGGAAGATCAGCTGAGAAATGAAATCGACAGGACTGAAGAAAAGTGTGTTACATTCAACCCACTTTGATTTGTCTAATTTATAGATGTACTCGTTTTtggattcatttaaatgtataagttAATTGGTAAGCAgtactttaaaaatactttgtttaattaCCTGAGCCAAAGGatggtattttatgttttgaagtTTTTATTCACTCTCCTTCTGaggataacattttaaaattttaaacaaaagccATGATGCATGTTTGTGTACTTTCTAATTTGCTTattgcaacttttttttattattgttattcataaAGATTTTTTTCATGTGCACTATAATGGACTTCCATGTCTACAGAAAAGACAGgaatatagtttaatttatcctttaaaatgtttagacTGTGGTCATAAATGTgcttagtgttttaaaaaaaacaaaaacaaaaaaaaagacaaaaacctgTGCAGATTTAAGTAAGGCGCCTCAAGAAATCAGTGaatttttatgaataaatttttgtctgattttcttttgagtgtttttggtataaaatattaatttgttgagCTTGATTTCCAATGACGCTGTGCTTTTGTTGGATGAGACAAAGAATGTGAGGGTTGCCTCTTGGATGAAATTGCTGCTATAATTAGATTTACTACTGTCTGTGAAACCtgtgacagaaataaaattTCTTaagaaaa

Function

GO: NA

KEGG:

id description
K13291 TUT; terminal uridylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010395 True 5120 mRNA 0.45 27 27851562 27867176

Neighbor

gene id symbol gene type direction distance location
AMCG00010384 NA coding upstream 37989 27810408 ~ 27813573 (+)
AMCG00010390 NA coding upstream 56235 27786437 ~ 27795327 (+)
AMCG00010383 NA coding upstream 76209 27763580 ~ 27775353 (+)
AMCG00010385 lpar1,LOC106568607,LOC107554848,LOC106572527 coding upstream 128191 27710613 ~ 27723371 (+)
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding upstream 303554 27525520 ~ 27548008 (+)
AMCG00010396 NA coding downstream 25434 27892610 ~ 27898498 (+)
AMCG00010392 NA coding downstream 52402 27919578 ~ 27933573 (+)
AMCG00010394 NA coding downstream 91531 27958707 ~ 28013490 (+)
AMCG00010402 NA coding downstream 289080 28156256 ~ 28169012 (+)
AMCG00010404 hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375 coding downstream 324406 28191582 ~ 28206181 (+)
G80264 NA non-coding upstream 55272 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 562706 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 648361 27203001 ~ 27203201 (+)
G80210 NA non-coding upstream 773058 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 934723 26916541 ~ 26916839 (+)
G80331 naa35 non-coding downstream 68990 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 154298 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 339145 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 857831 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 904051 28771227 ~ 28775463 (+)
G80249 NA other upstream 294555 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1448542 26380467 ~ 26403020 (+)
G80014 NA other upstream 1825259 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1855148 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 3014010 24833071 ~ 24837552 (+)
AMCG00010393 isca1,LOC107662049 other downstream 2263 27869439 ~ 27874931 (+)
G80326 NA other downstream 39321 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 375813 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1627387 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2899161 30766337 ~ 30817603 (+)

Expression


Co-expression Network