AMCG00010400 (LOC107562640)


Basic Information

Item Value
gene id AMCG00010400
gene name LOC107562640
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28232944 ~ 28242085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010400
ATCCTCGTCCTTTGTTGCCGCCAGACAAAATCCCAAACTACATTTAAATCCACCCTCACCTCGGCGTAAAGCGTAGCGATTTGGTTTTGTACTTCCGGGCCACCGTACTCCAAGGTTCTGTTGTGAAGTGACGTGAGACTGCAGAAGACACTCAAACAGTTTGCAGGTAGTACTACAGAGATGGCTTCCGCTGTACTGTCCTCAGTTCCCACCACTGCCTCCCGCTTCGCTCTCCTGCAGGTGGACAGCGACTCTGACTCCGACTCCGAGTCTGGAAAGAGCAAGGCAGGCCGGGAGGCCGGCAAGTCCCGCTCTGGAAAGGCAGCAGTTGGCAAATCTGTCAACAgcaatgagaagaaaaaagacaaaaagaagaagaagaaaggacAACAGCAGAGCGAAGCCAACGAGttaagGAGTCTTGCTTTCAAGAAGCTCCCTCAGAAATCCTCCCAGCCACCGCCGGCCCTCAATCTGCAGAACATCGCTGCTGATCTCATCCAGCACAACTCGGGAGATCATCGGGCACCCGAGGCCAATTGGCAGCAGTGGAAACAACGAGATGAACAGTTAACACATGATCTTTATGAAGCGGATCTGGAAAAAGCCTTAATTTTAAGCAAGTTGGAATATGAAGAACATAAACAGGATTTTGAAACTGTGGATACTACCTCACCTAAATCCAAAGGTGGAGGGAAGAAAGATAAAAGAAAGAACCAACAGGGTAAAGACAAACCCCTCACAGTATCCCTAAAAGACTTTCAGACGGAAGCAAATACAGATCATAGTAATAAGAAACCAGAAgaaacaaaacCTATAAATGCAGCCACCCAAGATGACAGGTTTTTCAATAAACTGGAAGATGACGTCAGCAAAATCTTACTTAAAGAGAAGAGACGAGAGCAGTTCACTGGCAACAGTGGCATTGAAATCCCTATACCTATAGAGCATGAAACGgaTGTAAGAAATGAACAACTTAAATATGAATTGGAAAAGAAAGACTTGGAAATAGAAAAGTTAAAGAAGATTATCTCACAGTGGGAGGGGAAATATAAAGAAGTGAAAGCAAGAAATGCACAGCTTTTGAAGATGCTTCAGCAAGGGGAAAtgAAGGATAAAGCAGAAATTCTTCTACAAGTTGAAGAGCTGATGAATATAAAGGAGGAGCTATCATCACAGgtCACTTCATTGCATGCAGCTCTTGAACAAGAAAAGTCTAAAGTAAAAGGATTACAGTCAGATCAGCCTAGGCATCATCAGggAAACAAGAAAGGCAAAAAGAACTCTGAATCTGATATATGAAGACCTATAAGGGACAATTCAGCAAAAAAAAGACTTATCTTCAGGGtttcatcatttaaaatgtacagaacacCCAAATGGtttaacaaacaattaattttgttgAGATTATTTGGTTGAAGATTCAAACCTTGTTGTTAAAGGGTTCTGattttcaaggtttttttttctttgtaattactTTAAACAAGTTTCATCTGActgttttacagaaataatatatacacagtattatTGCCATTTCTAAACAATAATCTAAGTATATTTTGGAGCATCATATTTTTCAGATCGCATTGGTATTTTAGTTGGTTTCACTCTTACAGAATCCACCTTTGATGGGTTTAGTTATTGTAACCCCAAATCAGAACCTTAcgttctttttttgttgttaattaaaTCTTATACTAATAAAAGTTTCTAAATGTCCCTAATcctataataatgataattctGTCCTTTTGTTTATCTACTGTTGAAATGCCAAAACATGTAATGCAAAGCTCTTTTTAACTGCAAAGTAAATAGACTACTTTTCCAGTGTCAAGTCTgatgtttgtttcttgtgtacctaatgcacatttaaaaaaagggtcAAATATTCTCCAAACGATTTATTCAATCTTCTACCAGACCTCACACTTTAAGTGGGTGTATG

Function

NR:

description
PREDICTED: G kinase-anchoring protein 1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010400 True 1957 mRNA 0.39 12 28232944 28242085

Neighbor

gene id symbol gene type direction distance location
AMCG00010403 NA coding upstream 479 28215856 ~ 28232465 (+)
AMCG00010401 NA coding upstream 20136 28210012 ~ 28212808 (+)
AMCG00010404 hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375 coding upstream 26763 28191582 ~ 28206181 (+)
AMCG00010402 NA coding upstream 63932 28156256 ~ 28169012 (+)
AMCG00010394 NA coding upstream 219454 27958707 ~ 28013490 (+)
AMCG00010408 NA coding downstream 61207 28303292 ~ 28334876 (+)
AMCG00010409 NA coding downstream 97795 28339880 ~ 28371632 (+)
AMCG00010410 NA coding downstream 134757 28376842 ~ 28389169 (+)
AMCG00010411 rasef,LOC106580191 coding downstream 154582 28396667 ~ 28399391 (+)
AMCG00010414 tle1 coding downstream 319061 28561146 ~ 28582925 (+)
G80392 NA non-coding upstream 25676 28206321 ~ 28207268 (+)
G80362 NA non-coding upstream 211260 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 295890 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 436654 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 944088 27288579 ~ 27288856 (+)
G80468 NA non-coding downstream 482922 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 529142 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 635739 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 658084 28900169 ~ 28994462 (+)
G80491 NA non-coding downstream 714187 28956272 ~ 29023473 (+)
G80326 NA other upstream 326115 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 358013 27869439 ~ 27874931 (+)
G80249 NA other upstream 675937 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1829924 26380467 ~ 26403020 (+)
G80014 NA other upstream 2206641 26012484 ~ 26026303 (+)
AMCG00010407 NA other downstream 904 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1252478 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2524252 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4231948 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5661730 33903815 ~ 33938237 (+)

Expression


Co-expression Network