AMCG00010402


Basic Information

Item Value
gene id AMCG00010402
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28156256 ~ 28169012 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010402
TGAGGGCATACACGTGCTGCTGGTGCTCTAGATTATGAACTAAATccattaattttacattatacagtttaactCCTCAGAATGATTAATTCCATGTTTAGCCTTTCTATTTTTGGGAGGATTGtatcctttaaataaataacttctaTCTTTCAGCTGAACCAGGAAGCAGAACAACattacacaataacacacacacacacattgtgtttACATGCGTTGGCACTGTGAAGCTGGAACCTCCCTTCTACATGGTATAAAGTTTCTCGGGAACTGTTCCTTCTTTTTATTCAAGTTATTGCCATGGAGCTTAATGAAGCAGCCCCTTCCAAAGACAGCAATCAAAAACAGGGAGCCACCAATCCTGCTTTTGAGGATTCTGTCAATACTGATTTGGACAACAACCAAGATTCACCAGTAGGGGAGAATGGAAAACTGCAAGAGCCTAAGAAAAGGTTCTTGGAAAAGAAATTTGACATTGTCTTTGGAAAGTTTGAGaaacacaggacacgtttcaaATATGCCTTTTATTCAGTTCTCCTGGCAGGTTACTTCGTGATGGTGATTGCCGCCTGTGCCTTAAACTTCCAGAGAGCTCTGGCACTCTTTGTTCTCACTTTGGCTGCAATATTCTTTTTCTGCTGGGATAATCTAATGGCAAGATATGAAGATAAAATTGTGATGTTTCTCCAGCCTCCTAAAAAGCTTCTTAAGAAGCATTGGCACTGGTTGAAATGGTAATGGTAATACTTCTGTTACAGTCTGGAACAATTTGCTTTTCACTTTCACCACACTGTAATGTCTTCTTTACACCATGTCCTGCATTATACTGTTAACCAGTCTTGATCCTGCAAGAGATTATAACTTCTTCTTAAACTGCCCAAATGGCACACCCTTTAAAGgaacattaatcattttttgtcattttaccaAGCACGGAAATGTGCAATAATTTCACAAGTTTAGTACATATGACTAAACCTTTATGAAGACTAATTTCATTATAGGTCATTAGTTGATAGCCTCTGTCCAATTATTACATGTAATATAATGTCATTATTTGGGAATGTTGTGCAGTCTAATTTCTGTATTAGATTTTTGTGAAAGTGTTCTATTTGTAAGATTAGTACAGATTTGTCTTCCGACCTAGAGGAATcaagtattttgaaaaacaatcataGCTCATATGTTTCTTTCCCCTTTTTGGTTCTCCAGGGTAGTATATAGTGCACTTGTTTTGGCAGTAATATGTTGGCTTGTGATTGACACAGCAAAGCAAGGTACTAACCAACTTATATCCTTTGGCGGCCTTGtcatgtatataataattatgtgcATCTTCTCAAAACATCCATTCAGGGTATCATGGAGAGCTGTTTTCTGGGGTCTAggattgcaatttatttttggacTTATAATTCTAAGAACTAAAGCTGGGTTTGATGCCATAAACTGGCTTGGCACACAAGCAGAGATTTTTCTTGGCTACACTGACGCTGGTTCAAAGTTTGTCTTTGGTGACACATTTACAGACCATTTCTTTGCATTTAAGgTTCTGCCAATAGTGGTATTTTTTAGCACTGTGATTTCCATGCTTTACTATGCTGGTTTCATGCAGTGGCTGATATTAAAGGTTGGCTTCATAATGCAAGTCACTATGGGAACTTCACCAACCGAGTCAATGGTTGCTGCTGGAAACATATTTGTCGGGCAGacAGAATCTCCATTATTAATCCGTCCTTATATATCGGACCTTACAAATTCTGAGATCCATGCAGTGATGACAGGGGGGTATGCCACTATAGCAGGAAGTGTCTTGGGAGCCTATATTTCATTTGGGATCCCCGCTTCCCATTTATTGACTGCGTCTGTGATGTCAGCACCTGCGGCTCTCGCCATAGCCAAGCTGTCCTGGCCTGAAACCGAGATACCAAAGATCACCACAAAAACAAGACTCAAACTGGAAAAGGGTGAAGGAAGTAATTTATTGGAAGCCGCTACACTTGGGGCCTCGGCCTCTATTCTGTTGGTAGCTAATATTGCTGTCAACCTGATAGCATTTCTGGCTCTGCTTGCCTTTTTGAACGCTGCATTATCTTGGCTTGGAAATATGTTTGACTACCCACAACTAACCTTTTCGctGATTTGTTCCTATGTCTTCATGCCCTTTTCGTTCATGATGGGAGTGGATTGGGAGGACAGCTTCCTGGTGGGGGAGCTCATTGGATACAAAACCTTCTTCAATGAGTTTGTTGCCTATGAAAAGCTGTCAGTCCTTATACATAAGAGACTGGAGGGGGGGCCGGAGTTTGTGGATGATGTAAAGCAGTATCTCAATGTTCACTCTGAAATTGTAGCCACCTATGCATTGTGTGGGTTTGCAAATATTGGATCATTGGGAATATTGATTGGAGGCTTGTCTTCCATGGCTCCAGAGAGGAGAGGTGATATAGCCAGGTGTGCTATTAGAGCTCTGATTTCTGGGACTGTTGCGTGCTTCATGACGGCTTGTGTTGCAGGAATATTGTACATCCCTGTTGTTGAACACATACCATGCACCATATTCCTTGAAAATGAATTTAACTCAACGTCaccaagaaacagcacacaGCTGTTGAACTGTTGTTTTGATCTTTATGACAACTATAACAgCTCAGTACCCAGTCTCGGGTCCCTCAGAAACTGCTGCGCAATGGTGAATTCTACAACATTTGACTGTGGTCCATTCCTGAGCTGAGGAACGGGTTGATTCTTCACTCCATGATGTGACACACTGTTTTTTCCTGCAATCTCCATTCCCAGACTACCTTCACTTATTGTATGAAATGAATTTGTAGCTGATATACCAATATTTTAGAGAGTAATATTAATGTTTCCATATACTGTTTCAGGCTCAGTTTCCTATTATGAACTTATAAGATTCAATTAATAAGACAACCTTTGTTAAAATCCATTAGCCAGCTCTGAAACTGACCAAAAGTACTTTGTGAAGTGTTGGAATTTCTGTTCAGCACGATTTATTTTCTACTCCACATTTACACATGCGtctttgcaatttaaattaaagctctttacattgtataaatgttttctttccaatCCAGCAGGaagacattacaataaatacTTAAACTACCTGTAATTATGTAGAGTGAAGGGAAATATATTGGTAAACAGCGTTCATTGAATTTGTCTTCAGCTTTAAAGAATCAATTAGACTATGTAGTTTTGTGGTTTAAACTGGTactgatattttaaattccattcCAATATACCCTATTATGtaattgtgtaaatatatgtaatgcatCTATAATTGAATCATGTAATGTAACTACAGCTTGTATTTCATTTAGCAAAGTGAGCCTCCATCAATAAATATGTCAACCACTACTACTCACAGTGCTGTggcttgtaataataataataataataataataataataataatagtatatcaCATATGATAAAGgaagtgaaataaaacaggTATAACATGTTGATAAACATTTTTTGCTAAAACTGACTGCCTCACAGATGTTTTTCTTACAGAGCCGTACTTTTAGCAGCTAATAATGACATGTTCAGACTCTTTTGAGGTCTGTGTCACTGGCTGGCCACTGTGAGCCCTGTAGATCTGATCATCCAGATTTTTTGTCATAGcatctttaataatttacttttcaaaCACAAGAGGGCGATGTTGTTTCACACACTGCATTTGATCAAAGGACCAAAtgacaaatgcttttttttt

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010402 True 3758 mRNA 0.38 17 28156256 28169012

Neighbor

gene id symbol gene type direction distance location
AMCG00010394 NA coding upstream 142766 27958707 ~ 28013490 (+)
AMCG00010392 NA coding upstream 222683 27919578 ~ 27933573 (+)
AMCG00010396 NA coding upstream 257758 27892610 ~ 27898498 (+)
AMCG00010395 NA coding upstream 289080 27851562 ~ 27867176 (+)
AMCG00010384 NA coding upstream 342683 27810408 ~ 27813573 (+)
AMCG00010404 hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375 coding downstream 22570 28191582 ~ 28206181 (+)
AMCG00010401 NA coding downstream 41000 28210012 ~ 28212808 (+)
AMCG00010403 NA coding downstream 46844 28215856 ~ 28232465 (+)
AMCG00010400 LOC107562640 coding downstream 63932 28232944 ~ 28242085 (+)
AMCG00010408 NA coding downstream 134280 28303292 ~ 28334876 (+)
G80362 NA non-coding upstream 134572 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 219202 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 359966 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 867400 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 953055 27203001 ~ 27203201 (+)
G80392 NA non-coding downstream 37309 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 555995 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 602215 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 708812 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 731157 28900169 ~ 28994462 (+)
G80326 NA other upstream 249427 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 281325 27869439 ~ 27874931 (+)
G80249 NA other upstream 599249 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1753236 26380467 ~ 26403020 (+)
G80014 NA other upstream 2129953 26012484 ~ 26026303 (+)
AMCG00010407 NA other downstream 73977 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1325551 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2597325 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4305021 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5734803 33903815 ~ 33938237 (+)

Expression


Co-expression Network