AMCG00010404 (hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375)


Basic Information

Item Value
gene id AMCG00010404
gene name hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28191582 ~ 28206181 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010404
CTTGTCGGTGTTGGGAGTGGAAGGCAGAACGGGGTCTGCAAGCAGGTTTTAAGCAGTTCTTGGAGACCTTAGTAGTCCCCGCCCACAACACGCCCATTTAACCACAATAAATAGTGCTGTTTCACAGAGAGAAGAGCCCGATTTCATTTCAGCTTTGTTAGAAGACAATGGAGACTGAAATTGAACAGCAGGAAGAAGAGACTACTTTCAGCAACACAGAGACAAACGGAAAGCGCCCAGCTGAGGACATGGAGGAAGAACAGGTCTTTAAGAGGTCTCGTAATACTGATGAAATGGTGGAACTGCGTGTCCTGCTTCAAAGCAAAAGTCTGGCAGGGGGCATCATTGGGGTCAAAGGAGCCAAGATCAAGGAGCTGAGAGAGAACACTCAAACGACAATCAAGCTTTTTCAGGAGTGTTGTCCTCATTCCACGGATCGTGTAGTTCTTGTTGGAGGAAAACCTGACCGAGTAGTGGAGTGCATTAAGATCATCCTGGAGTTGATATCTGAGGCTCCAATTAAAGGTCGTGCTCAGCCTTACGACCCAAACTTCTATGATGAGACTTATGACTATGGCGGTTTCACCATGATGTACGATGACCGTGGCCGGCGTCCTATGGGTTTCCCAATGCGTGGCCGAGGGGGCTTTGACCGGATGCCTCCCGGCCGGGGTGGGCGACCTATGCCTCCATCGAGAAGGGATTATGATGATATGAGTCCCCGTCGAGgaccaccaccacctcccccGGGCAGAGGGGGCAGAGGGGGCAGCCGAGCCCGAAACCTCCCTCTGCCGCCGCCACCACCTCCCAGAGGAGGAGATGAGCAGTTTTCCTACGAGACCTTTCATGCCAATGCAGACGACGGACCAAATAATGATAGAAGAGGGAGACCTGGTGATCGCTATGACGGAATGGTGGTCGAGGGTCCTATGGTGACATCGGAGGGCCTGTTATCACAACGCAAGTAACCATCCCCAAAGATCTGGCTGGATCAATTATTGGAAAAGGAGGTCAACGAATCAAGCAAATCCGACATGAGTCTGGAGCGTCAATTAAAATAGACGAACCTCTGGAAGGATCTGAAGATCGCATCATTACCATAACAGGCACACAGGACCAGATCCAAAATGCACAGTACCTATTGCAGAACAGtgtGAAGCAGTACTCTGGTCGGTTCTTCTAAAGGAGGAGAGTAAGATTGAAGGAATACTGCGCTGCTTGTTTTGTCCCTGCTTCTGTTAAAAGAGCCAACATTCCTCTGCTTTAGGTAGATGTTCTGCATTTGGGGTGTAGTTCAAATTCTGCTTCTTTTTCCATCtgatgtaacatttttaattcttaGAGAACTTAAACTAAATGttcaaaacagcagcagaatgagtggattcttgtttttttttgttttgtttttttgttaaacttgTTTTGATGGattattgtaatgtgttttctgtaattAGAGTAAACTCATCTGTATGTACACTGTTTGTATGGGCAAAAGTACTGGTAGCTGAAATGTGCCAGACATCCATTCAGTACAATGTGCGGAATGTAATCTTGTTTTGTAAGgaacattttatgatttttaaaataaatttagtAAATTGTACTTTCTTGCTATTTTTCAGTTAACTAAAGGCTAGGGGCtgtataaagaaatgtaaatatacagtaatgATTTCTAAGACTTTTATAGAATTTGAATTTgcataaagatttttttttctctgtgggtTATATTCTAGTGTACTGATTGGACCAAAAAGTGGGAGATAGTCGGGGGGGGTGTCTTTAGAGCCCATCAGTCATGTTAGATGTGTAATCAGCATTCAGCAGTGTATTGAGCTCATTGcctgttttaaatacatgccCCATATAAATAGGATTTGATCATTTATGTAGTgcacaagtcttttttttttcttcacaaacacTTAGATTTAGACAAAATCCATTGGTCTTGCTGAAGCCTGTTTTCTACTTGTCTATGTGTAAGCATTTTTAAAGTATACGATAGTCTTTACACTTACCATTCAGTCAGTTTATGCAGTATGATTATCTTCAGATGTGCaggccttttttgttttgccagaAGTTTAGATGTACATCATTCCACCCTTATTTCCTTCTGAAGTCCTGCTGTAGAATCTGCTGCAAGTCTCCGTAATAAAGCAAATGCCACCTTTtaataaatgcacttttttgGGGATGGTTAAAATGCCATATTCTATTAAATCTTGTATTCCTGCAAAAGTTCATTTGGGAGAATTGTAACCTAATTGGTAAGTAAATGATGACGTTTTACTATGTCCAGTTTgattttcttgtgtttcttcAATATTAACAATTCTGAGTCTTCACTATCTTAATTCATTTATGAGCTAAAACAATTGCTCAAATATCATTATTAGGTCTTCTTAAATCTCTTCACCCAGCTCTGAATTAAACCTAAGAGTGTTTCCTCGTCTGCTTATGGGAATATATGACTTTCCTTAGTTTCTCTGCCTGGTGTGCCAAGTCAGTGACATCGTGATCAACTCTCCCTGTGCACAAAGCAGGGGGAAAGGGCTTTATTCTATGCAGTATAATTTTGAGCGAAGAATATGAAACATTTGCTTTCTATTGCGGATAATCTGTTTTGTTAAGAATTGAGTTTCAAAGGTGTTCTTAGTGCATTTACTTCCACTGTTGATTGGTCAAATTGACATTTCTAAGGGGGAGATCTTCTCCAGCAATACCTCTCAATACTCTGAATTGTAA

Function

symbol description
hnrpkl Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleoplasm and viral nucleocapsid. Predicted to be part of spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human HNRNPK (heterogeneous nuclear ribonucleoprotein K).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein K-like

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12886 HNRNPK; heterogeneous nuclear ribonucleoprotein K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010404 True 2763 mRNA 0.42 12 28191582 28206181

Neighbor

gene id symbol gene type direction distance location
AMCG00010402 NA coding upstream 22570 28156256 ~ 28169012 (+)
AMCG00010394 NA coding upstream 178092 27958707 ~ 28013490 (+)
AMCG00010392 NA coding upstream 258009 27919578 ~ 27933573 (+)
AMCG00010396 NA coding upstream 293084 27892610 ~ 27898498 (+)
AMCG00010395 NA coding upstream 324406 27851562 ~ 27867176 (+)
AMCG00010401 NA coding downstream 3831 28210012 ~ 28212808 (+)
AMCG00010403 NA coding downstream 9675 28215856 ~ 28232465 (+)
AMCG00010400 LOC107562640 coding downstream 26763 28232944 ~ 28242085 (+)
AMCG00010408 NA coding downstream 97111 28303292 ~ 28334876 (+)
AMCG00010409 NA coding downstream 133699 28339880 ~ 28371632 (+)
G80362 NA non-coding upstream 169898 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 254528 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 395292 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 902726 27288579 ~ 27288856 (+)
G80217 NA non-coding upstream 988381 27203001 ~ 27203201 (+)
G80392 NA non-coding downstream 140 28206321 ~ 28207268 (+)
G80468 NA non-coding downstream 518826 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 565046 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 671643 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 693988 28900169 ~ 28994462 (+)
G80326 NA other upstream 284753 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 316651 27869439 ~ 27874931 (+)
G80249 NA other upstream 634575 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1788562 26380467 ~ 26403020 (+)
G80014 NA other upstream 2165279 26012484 ~ 26026303 (+)
AMCG00010407 NA other downstream 36808 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 1288382 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2560156 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4267852 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5697634 33903815 ~ 33938237 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location