AMCG00010407


Basic Information

Item Value
gene id AMCG00010407
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28242989 ~ 28265443 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010407
CCGAAGGTCTACGTCATAACGAAGCAAGTAAACAAAACCAGGTCAGctgttgctttttcatttgatCTATTTCCCTTACTTTCCAACAACGCGCAGCACTGTTGTGTAAGAAAGCACGGATGCTACGGATGACGGAAAGGGGGTTTTCTGTACGGCGCCGCGCTTTTACCCATGATGCCCAAAACTGTCTGACAATCAGGAAGCAGTAAGTTGAAGTGATCGGTTTCGCAGACATTTGTTTTCGCAGTATAATCATAATTTCCCCTTTTGACGATTGGTATTATTGCCACTTGACAACCGACGGAAATTGAAACAATTACAAACCGAGGACATGGCGGACAGTGGGGACACCCCGGGAGCCTCCTCTGATCCCAAGATCATCAAAGTGACTGTCAAAACTCCCAAAGAGAAGGAGGAGTTTGCCGTGCCTGAAAACAGCACGATCAGACAGTTCAAAGAAGAGATTTCCAAGCGTTTCAAGGTGCAGACAGAACAACTGGTGCTGATATTTGCTGGTAAAATCTTGAAAGACCAGGACCTACTCACCCAGCATGGCATCCACGATGGACTGACTGTTCACCTCGTCATCAAAACACAGAGCAGgtcaCAGGACCAAGCAGCCCAGTCATCCAGCAACTCTTCTAGCAGTAGTGCAAGAGTCTCCACAGAGTCTAGCAGCACAACTACTGCTACTACCACACCAGCCTCCAGCAACCCTTTACACCTTGgGGGACTCGGGGGGCTAGCAGGCTTGAGCGGACTGGGAATGGACTCCACCAGCTTCTCCGAGCTTCAGACCCAGATGCAGAGACAGTTAATGTCCAACCCGGAAATGATGGCTCAGATCATGGAGAACCCCTTCGTACAAAGCATGCTGTCAAACCCAGATCTGATGAGACAGTTAATCATGGCAAACCCTCAGATGCAGCAGTTGATTCAACGAAATCCAGAGATTAGTCACATGCTCAATAATCCGGACATAATGAGACAAACATTGGAGCTTGCCAGGAATCCAGCTATGATGCAGGAGATGATGAGAAACCAGGACAGGGCTCTGAGTAACCTTGAAAGTATTCCAGGAGGCTACAATGCTCTGCGGCGCATGTACACAGACATTCAGGAGCCCATGCTGAATGCAGCACAGGAGCAGttcgGAGGGAACCCCTTCGCTTCTTTAGTAAACAGTTCTCCTAGAGGTGGGGGTCAGCCCTCATGCACAGAGAACAGAGACCCCTTACCTAATCCCTGGGCGCCTCCTGCCACCTCGCAAACCCCCTCTTCCGGCACTGCTGGCATTCCAACCCCCAGCCCAGCACAGGGCACTGCTCACCCCAGCCTGGGGCCGGAGATGGGAGcaggGATGTTTAACACACCGGGAATGCAGAGCTTGTTGCAGCAGATAACAGACAATCCCCAACTGATGCAGAACATGCTGTCAGCGCCATACATGAGAAGCATGATGCAGTCGCTGAGCCAGAACCCAGATTTAGCTGCCCAGATGATGCTGAACAACCCCCTGTTTGCTGGGAACCCGCAGCTGCAGGAGCAGATGAGACTGCAGCTCCCCATGTTCCTTCAGCAGATGCAGAATCCAGAAACCTTAGCCGCCATGTCGAATCCCAGAGCAATGCAGGCCCTGTTACAAATCCAGCAGGGCTTGCAGACATTGGCAACAGAAGCTCCAGGCTTCATTCCGGGTAGCCCAGCTACAGGCTCTACTACCACACCTGGTGACTCAACAAGCAGTGCTCCAGGAAGCCCGGATGTAGGGCAACAACAGTTTGTACAACAGATGTTACAAGCACTTGCTGGAACCAATACACAGGTCCAGAATCCTGAAGTGAGATTTCAGCAGCAACTAGAGCAACTCAGTGCGATGGGATTTCTTAACCGTGAAGCCAATTTGCAAGCGCTAATCGCCACCGGAGGAGACATCAATGCCGCAATCGAGAGGTTACTGGGGTCACAACCCTCATAGCATCACTCATTCAGTctgcaaacaaatgtaatttatttttgatataacAACTGTTAAATCGTTCAGATTCTCGCTTTATTTCACTCTGACCCTCGAGACAGCGGCTTTGTGTTTTTAGGAAGGCACTGTAAAGTGAAGTTCCGTAGATTCACAAGAGCAGTGGGGATCAATCACTATGCTGCATGAagcaaaaactaaactgaagactaacatatttattgtgatttttctttttaaaagcattattggCTTCTTACAGTTGTGTGAGCTGGTGGTGTTACCTGAAACTGTCATACTCAGCATTTCCCTATCCTCTTCTTTTGGTTTATGGTCTTCAGTAGTAATTTATATGTTTGAAGTGAAGGAAAAGAAATATCAGACCTGTCAAACTACAACTGGTCACAGCTGCAAATTATGGTATATTGCTTCTTGTTTAAACAGCATGTTATTTTTGCTAACAGAGCCTTAAACATAAGTGTCCAGACCTATTAACTTGGTATGCTAATGTCAGGTCTAGAACAGTGTTTCTAGAggaatatggaaaaaaaaaaaacttgttttcgCAAATTAACAACTGTagacttgtaaaataaattgaaggaGTATCTTGTTTGGAACACTGATTTGGAaatctacacacacacctgtacagaTAAAGAGAGCACTGTATTATAGTTTTTgggttataaatatatacaatgatTTAACCATTCTTGATTTAACTGGTTTGACATCCTTTGAAAAGCACTGTATACCCATACTGAaattgtgtgctttttaaatcattctgcTCATTGGCTGTTGCCACTGTATTCCTGAACTGCATTAGAATTTGTAACAGacatattttcaattcaattcaagtgTCACTTGTGATATTAATCTCATTACTTCGAACTGacttgtaaaaataatgtacatcttttcagtttttatcaGTAGccaattttttttcctgtgcacaggtcaataaaatcaaatgtaaaaagaaaaaatgttgtttagtatttataaataattaaaacccccaaactaaacaaataacaaGATAAAACAGCAATTGCACCagaacaatgaaaaacattacttttacCAAGATGCAGAATAATTCACAACAATATGAGTAGGGTCTGTTTGTGATTGCAGAGATTTGTAAGGCCATCAGAATGaattaaatatctgttttctaaCTTGCATTTAGCAAATAAAGATTCAAATTCTGTTCTATTAGCATGACATGTGGAATAATAAACATCCTACAGCttgcacaatttaatttaataacaatgtATCAGAAAAGcggttttcacattttgaattcCAGTCAAATTCTTTCCTGTTTTATGAAGATCACTCAAATGTTTTGTTGCAGTAACTATTGAtgccactagatggcagtaaatgtaacattaaatagttttaaattgaCTTCTATTAGACAATCAGCAAATCAAACaggtttcatattttaaactgtataacTTGGGTTTCTAACTTGATTTAACAAAGCATTGTAAGATTGTAGagatatacaatatttttttcccctcattccAGCTGTGATCACAAGTTGGCTTTGAAATCATTGCTCAAGAAAACGATTCTTAAAGTTTTCTACAAAATGACAGTGAAATAATAAGTCTTTGGTAAAATTACAGTCCTGTAGTACAGACATACCTGGAAgatatgcataaatataaacacCAGGAGGAAGAAAACAAGACATTGTACTAGAGTGACAGACCAACTATTAGATCCATATTTATCTGGATTGAATGTCTCTCGAAATACGTAACGCTGGCAACTTTGTGTACAGCAACTGCTAAAAACATATGAtgaataatggaaatgtatccCTGTGAGATAACACTGACTGATGCCTTAACAAGCCATAATCTGGGAATTTACATTAGGAAGCAAGATATTCACAagatgggaaagaaaaaagctgcATGTtcattatatatgcatttacacagctgtatctaataatcttaaaactggaaataaagaaaaatagctTTTCAGATACAGTTGTAGTAACACCAATTATTCTATACTACATGATGAATATGCTATGGGTCCAGGTcaagataattaaattatttatattgggtaaaataactaaatattcaCCTAATTGGTGCtgatacattaaacaaaacgcTGAGAAGAATGTGGGCCGTGTGTGTAatccttttccatttcattgtATTCTGAAATCCCATTTTAACACACTTGaaactatatacaaaaaaaacttcatAGCATAATGATTTGCTTGGCTGTGGGAAAACCTCTATTTTctatatcaaaagcaaagtatttcaaatgtaacaaaCCTATTCTGAACGCTTCACAGGTCCACTGCCAACAATCACAGAAGCCTGCACATagaatacatttgcttttgtttaatcgTTTGAAAACTAGGCACCACGGCACAATTCAAGCATAAATGTGTCGAGTAAGAGTACATTTCATTAGGCAGTTTTGTATAGGAAAGAGTTAGTTGTCAATTAAGCAATATAAAGGATCTCTACGTTATTTTTCGAATAAACAATTCAGTAAATATACACACCAAGCCATTTCTCTTCATCATTGAACGAATCTGTCCgttcctttttgtgtgtgttctccCCATCACTGTGCAGTGTGAGCTCTGACAGGGATCCGCCCCAATCTGTCGACCTGAAGTGTTTCCATAGCTACAGATATGAAGGAAGAGCGCTCTCGATCTCGGCAGCAATTTCTGGGATGCTCTTCTCAATATCCAGGGTAATAGAGTTCTCGGATGCAGAAGGGGGTTCCAGTATGTCAAACTGAGATTGAATCAAACTCGGTGCCATAAAATGTCCTTTCCTGGTAGCCATTCTCTTACTGATGAGCTCAATGGACCCGTGAAGGTACACAAACAGGATCCCCTTAACCCGATCACGCTGCTCTTCCCTGCATTTTAAGTTTGAGATTTCCGTTCCAAACAACAGCGTCTCTCTGTAAACTCTCTTCAAAGCTGAACATATTAGAATTGCATTTCTCCCTGAAGACATCTCCCTGTGATTATGTCATGCAAAACAAGTAACCAAGGTATCCTATCCTGTTgaataaatAAAGGTATTCCTTTGGCCATTCTGTCTATGTTTTCCATGGGGTGATAGTCATCTCCATCAAATAGAGTCCAACCCAGCTGGTTTGCAAGGAATGATCCCACAGCCGTTCT
>TU100289
GGGAATTTACATTAGGAAGCAAGATATTCACAagatgggaaagaaaaaagctgcATGTtcattatatatgcatttacacagctgtatctaataatcttaaaactggaaataaagaaaaatagctTTTCAGATACAGTTGTAGTAACACCAATTATTCTATACTACATGATGAATATGCTATGGGTCCAGGTcaagataattaaattatttatattgggtaaaataactaaatattcaCCTAATTGGTGCtgatacattaaacaaaacgcTGAGAAGAATGTGGGCCGTGTGTGTAatccttttccatttcattgtATTCTGAAATCCCATTTTAACACACTTGaaactatatacaaaaaaaacttcatAGCATAATGATTTGCTTGGCTGTGGGAAAACCTCTATTTTctatatcaaaagcaaagtatttcaaatgtaacaaaCCTATTCTGAACGCTTCACAGGTCCACTGCCAACAATCACAGAAGCCTGCACATagaatacatttgcttttgtttaatcgTTTGAAAACTAGGCACCACGGCACAATTCAAGCATAAATGTGTCGAGTAAGAGTACATTTCATTAGGCAGTTTTGTATAGGAAAGAGTTAGTTGTCAATTAAGCAATATAAAGGATCTCTACGTTATTTTTCGAATAAACAATTCAGTAAATATACACACCAAGCCATTTCTCTTCATCATTGAACGAATCTGTCCgttcctttttgtgtgtgttctccCCATCACTGTGCAGTGTGAGCTCTGACAGGGATCCGCCCCAATCTGTCGACCTGAAGTGTTTCCATAGCTACAGATATGAAGGAAGAGCGCTCTCGATCTCGGCAGCAATTTCTGGGATGCTCTTCTCAATATCCAGGGTAATAGAGTTCTCGGATGCAGAAGGGGGTTCCAGTATGTCAAACTGAGATTGAATCAAACTCGGTGCCATAAAATGTCCTTTCCTGGTAGCCATTCTCTTACTGATGAGCTCAATGGACCCGTGAAGGTACACAAACAGGATCCCCTTAACCCGATCACGCTGCTCTTCCCTGCATTTTAAGTTTGAGATTTCCGTTCCAAACAACAGCGTCTCTCTGTAAACTCTCTTCAAAGCTGAACATATTAGAATTGCATTTCTCCCTGA

Function

GO: NA

KEGG:

id description
K04523 UBQLN, DSK2; ubiquilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010407 True 5198 mRNA 0.41 14 28242989 28265443
TU100289 False 1146 lncRNA 0.38 1 28261527 28262672

Neighbor

gene id symbol gene type direction distance location
AMCG00010400 LOC107562640 coding upstream 904 28232944 ~ 28242085 (+)
AMCG00010403 NA coding upstream 10524 28215856 ~ 28232465 (+)
AMCG00010401 NA coding upstream 30181 28210012 ~ 28212808 (+)
AMCG00010404 hnrpkl,LOC107728199,LOC107691775,LOC107600582,LOC105890375 coding upstream 36808 28191582 ~ 28206181 (+)
AMCG00010402 NA coding upstream 73977 28156256 ~ 28169012 (+)
AMCG00010408 NA coding downstream 37849 28303292 ~ 28334876 (+)
AMCG00010409 NA coding downstream 74437 28339880 ~ 28371632 (+)
AMCG00010410 NA coding downstream 111399 28376842 ~ 28389169 (+)
AMCG00010411 rasef,LOC106580191 coding downstream 131224 28396667 ~ 28399391 (+)
AMCG00010414 tle1 coding downstream 295703 28561146 ~ 28582925 (+)
G80392 NA non-coding upstream 35721 28206321 ~ 28207268 (+)
G80362 NA non-coding upstream 221305 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 305935 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 446699 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 954133 27288579 ~ 27288856 (+)
G80468 NA non-coding downstream 459564 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 505784 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 612381 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 634726 28900169 ~ 28994462 (+)
G80491 NA non-coding downstream 690829 28956272 ~ 29023473 (+)
G80326 NA other upstream 336160 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 368058 27869439 ~ 27874931 (+)
G80249 NA other upstream 685982 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1839969 26380467 ~ 26403020 (+)
G80014 NA other upstream 2216686 26012484 ~ 26026303 (+)
AMCG00010431 NA other downstream 1229120 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2500894 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4208590 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5638372 33903815 ~ 33938237 (+)
G81496 NA other downstream 6435995 34701438 ~ 34707394 (+)

Expression


Co-expression Network