AMCG00010410


Basic Information

Item Value
gene id AMCG00010410
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28376842 ~ 28389169 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010410
ATGGAGGAAGAAGAGGATCTGGACACACTGCGCTTTCTGTTTCACGCCTGTGATCTCAATAATTCGGGGCGAATTGAAAAAGAGGAGTTTTTCACCGTTTGCTCAGAGCTGCACGTCCAGGCGGCTGAGATAGAGACCATCTTCACAAAGCTGGACGTGGACAGGGACGGGTCCATTAACTTTGAGGAGTTTACTAACGGGTTTCAAGGAGTATCCGACCTCATCTCCCTCCGAGGGATGGAGAGCGAAAACGGGGACTTTCGCCAGGCTTGGGAGCAGTTTCACCACAGACTCGGGGAGCAGGCGAAATTCATCCCAAGagcGGAACAAGTGGCCACCTTGTACCAGAATATCAACCTCACCGAGCCCAGAATGGTGCCTCAGTATGAACGAGTCATAATGAACTTTGTTCGAGAAATCAAGCTTCAGAATTCGGAGATGGAGAACCTAGCGCTGGCTGTGAAAAGAGCTCAGGATAAAGCAGCAATGCAGCTCAGTGAAATGGAGGAAGAGATGGATCAGCGAATACaagcaacagaaaacaacattagACAACAAgaaaacaaaaaagctgaaGCTGCGCTGTATGACCTCAAAAGTCAGTATGAATCCGAGGTCTGTGAATTACAGATGAAAATCCAGAAGATGAAATTGAtagaagaacaatacaaaaatatcaatCTTAAGGATGAGGTTGtgggattaaaaagaaaaataaatgagctgACATTGGAGAATCAGCGACTGAAGAAGGATCTGCTTCAGTCTCAAACTAATATTGCAACCCTCCAAAGTGAACTGGATTCTTTGAAAAGTGTTTTCACAGATCAGAGTATGAACTTTGAAAGGGATGAAGACTTTATCAGAGAATACAGCGATGAAAGGGATAATTTAGCTCGGCAAATCGAGATGCTGCAGTCCGCTAATAGGAAGCTCCATGACAGTAATGATGGGCTAAGAAGTGCACTGGAACAGAGTTTcagcaaatacaataaaagcttACGTTTGCCCAACACGTCCCCATTAAGTACAATTTCAAGATCCAGATCTCCATTTTTTGACAGGTCTTCTCACTCTTCCTACATGGATGAGGACTGTGACTCCCTGGCCATGTGCGACCCCATGCGCAGGGTGAGCTGCGAGGTGGAGAGCCTGGCGGAGAGCTGCTTCGACAGTGGCCTCTCCACCCTCAGAGACTCCAATGACTGCGACTCGGAGGCCGAGACCCGGCTTCAAAAGGCCTTCCAAAGGTCACAGGAGATGGCAGAGAGCCTGGGGGGAGACGCTTCTGACACAGATGTGCCAGAGATCCGAGATGAGGTGGTCTGTGGTTCTGACAGCGGCTCAGTATTAGACTGGAAACCGTCAAATCCGGTCAGCAGGAGCAGTTCAGGAGCCTCAACTCGCAGATGTATTTCTGCAATTTCTCCACAGGTACAGCATCCCATATTAACTTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010410 True 1458 mRNA 0.47 11 28376842 28389169

Neighbor

gene id symbol gene type direction distance location
AMCG00010409 NA coding upstream 5210 28339880 ~ 28371632 (+)
AMCG00010408 NA coding upstream 41966 28303292 ~ 28334876 (+)
AMCG00010400 LOC107562640 coding upstream 134757 28232944 ~ 28242085 (+)
AMCG00010403 NA coding upstream 144377 28215856 ~ 28232465 (+)
AMCG00010401 NA coding upstream 164034 28210012 ~ 28212808 (+)
AMCG00010411 rasef,LOC106580191 coding downstream 7498 28396667 ~ 28399391 (+)
AMCG00010414 tle1 coding downstream 171977 28561146 ~ 28582925 (+)
AMCG00010424 gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278 coding downstream 659017 29048186 ~ 29060040 (+)
AMCG00010423 NA coding downstream 706168 29095337 ~ 29107346 (+)
AMCG00010421 NA coding downstream 834147 29223316 ~ 29228983 (+)
G80392 NA non-coding upstream 169574 28206321 ~ 28207268 (+)
G80362 NA non-coding upstream 355158 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 439788 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 580552 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 1087986 27288579 ~ 27288856 (+)
G80468 NA non-coding downstream 335838 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 382058 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 488655 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 511000 28900169 ~ 28994462 (+)
G80491 NA non-coding downstream 567103 28956272 ~ 29023473 (+)
AMCG00010407 NA other upstream 111399 28242989 ~ 28265443 (+)
G80326 NA other upstream 470013 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 501911 27869439 ~ 27874931 (+)
G80249 NA other upstream 819835 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1973822 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 1105394 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2377168 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4084864 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5514646 33903815 ~ 33938237 (+)
G81496 NA other downstream 6312269 34701438 ~ 34707394 (+)

Expression


Co-expression Network