AMCG00010411 (rasef,LOC106580191)


Basic Information

Item Value
gene id AMCG00010411
gene name rasef,LOC106580191
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28396667 ~ 28399391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010411
ATGTCCCCGATAGTTAACACTCAAAACAGAAGGATAGgtgcAGACAAAGCTGACAGTGACTTCAAATATCCAAATTCGGATAAAGCATACAAGATAGTCTTAGCCGGAGACGCAGCGGTCGGCAAGTCCAGTTTTCTACTGCGGCTTTGCAAAAATGAGTTCCGAGGAAACACCAGTGCCACACTAGGTGTTGACTTTCAAATGAAGACACTAGTTGTTGATGGAGAGCCTACAGTTCTGCAGCTTTGGGACACAGCTGGGCAGGAAAGATTTCGAAGTATTGCCAAATCATATTTCAGACGGGCAGATGGagtattattgttatatgaTGTCACTTGCGAGAGAAGCTTTCTCAATGTTCGAGAATGGGTGGACATGATTGAGGATGCCTCTCAAGGTGAGATCCCCATTATGCTTGTAGGAAATAAGGCAGACCTACGCAAACAAGCAACTGAGGAGGGAATAAAGTGTATTCCAACCAGCTATGGAGAAAAGCTAGCAATGACATACAACTCTCTGTTTTGTGAAACAAGTGCTAAAGATGGTTCAAATATTATTGAAGCTGTGCTACATTTGGCCCGGTAA

Function

symbol description
rasef Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Orthologous to human RASEF (RAS and EF-hand domain containing).

NR:

description
PREDICTED: ras and EF-hand domain-containing protein homolog

GO: NA

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010411 True 585 mRNA 0.43 6 28396667 28399391

Neighbor

gene id symbol gene type direction distance location
AMCG00010410 NA coding upstream 7498 28376842 ~ 28389169 (+)
AMCG00010409 NA coding upstream 25035 28339880 ~ 28371632 (+)
AMCG00010408 NA coding upstream 61791 28303292 ~ 28334876 (+)
AMCG00010400 LOC107562640 coding upstream 154582 28232944 ~ 28242085 (+)
AMCG00010403 NA coding upstream 164202 28215856 ~ 28232465 (+)
AMCG00010414 tle1 coding downstream 161755 28561146 ~ 28582925 (+)
AMCG00010424 gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278 coding downstream 648795 29048186 ~ 29060040 (+)
AMCG00010423 NA coding downstream 695946 29095337 ~ 29107346 (+)
AMCG00010421 NA coding downstream 823925 29223316 ~ 29228983 (+)
AMCG00010420 NA coding downstream 850061 29249452 ~ 29251205 (+)
G80392 NA non-coding upstream 189399 28206321 ~ 28207268 (+)
G80362 NA non-coding upstream 374983 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 459613 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 600377 27795510 ~ 27796290 (+)
G80235 NA non-coding upstream 1107811 27288579 ~ 27288856 (+)
G80468 NA non-coding downstream 325616 28725007 ~ 28725281 (+)
G80469 NA non-coding downstream 371836 28771227 ~ 28775463 (+)
G80487 NA non-coding downstream 478433 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 500778 28900169 ~ 28994462 (+)
G80491 NA non-coding downstream 556881 28956272 ~ 29023473 (+)
AMCG00010407 NA other upstream 131224 28242989 ~ 28265443 (+)
G80326 NA other upstream 489838 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 521736 27869439 ~ 27874931 (+)
G80249 NA other upstream 839660 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 1993647 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 1095172 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 2366946 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 4074642 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5504424 33903815 ~ 33938237 (+)
G81496 NA other downstream 6302047 34701438 ~ 34707394 (+)

Expression


Co-expression Network