AMCG00010424 (gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278)


Basic Information

Item Value
gene id AMCG00010424
gene name gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29048186 ~ 29060040 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010424
ggCAATGCACACATAGTCCGTGAAGTTGATGTTGAGAAGGTTAGCATGTTCAACAATCCCTATGTAGATGCCATTAAGAGCCTGTGGAATGACCCAGGTATCCAGGAGTGTTATGACAGACGGAGAGAATACCAACTTTCGGATTCAACCAAATACTATCTAAATGATCTGGACCGTATAGCAGAACCTGCCTATCTGCCCACCCAACAAGATGTGCTTAGGGTCCGAGTCCCAACCACAGGGATCATTGAGTACCCTTTCGACTTACAAAGCGTCATTTTCAGGATGGTGGACGTAGGTGGGCAGCGATCCGAAAGGAGAAAATGGATacactgctttgaaaatgtgacCTCCATCATGTTTCTGGTGGCCCTCAGTGAATACGATCAAGTGCTTGTTGAATCTGACAACGAGAATCGAATGGAAGAGAGTAAAGCACTTTTTAGGACAATAATAACATATCCCTGGTTCCAGAATTCATCAGtcattctatttttaaacaagaaggACCTTCTAGAAGAGAAGATTATGTATTCTCATCTTGTTGATTACTTTCCTGAATATGATGGTCCACAGCGTGATGCCCAAGCAGCAAGGGagttcattttgaaaatgttcgTGGACCTGAATCCTGACAGTGACAAAATTATCTACTCTCACTTCACCTGtgccacagacacagagaatATCCGCTTTGTCTTTGCTGCTGTCAAGGACACTATCCTACAGTTGAACCTGAAGGAGTACAATCTGGTCTAG

Function

symbol description
gnaq Predicted to enable several functions, including G-protein beta/gamma-subunit complex binding activity; GTPase activator activity; and GTPase activity. Predicted to be involved in action potential and adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in gill and nervous system. Human ortholog(s) of this gene implicated in Sturge-Weber syndrome; congestive heart failure; and familial multiple nevi flammei. Orthologous to human GNAQ (G protein subunit alpha q).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(q) subunit alpha

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04634 GNAQ; guanine nucleotide-binding protein G(q) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010424 True 759 mRNA 0.43 5 29048186 29060040

Neighbor

gene id symbol gene type direction distance location
AMCG00010414 tle1 coding upstream 465261 28561146 ~ 28582925 (+)
AMCG00010411 rasef,LOC106580191 coding upstream 648795 28396667 ~ 28399391 (+)
AMCG00010410 NA coding upstream 659017 28376842 ~ 28389169 (+)
AMCG00010409 NA coding upstream 676554 28339880 ~ 28371632 (+)
AMCG00010408 NA coding upstream 713310 28303292 ~ 28334876 (+)
AMCG00010423 NA coding downstream 35297 29095337 ~ 29107346 (+)
AMCG00010421 NA coding downstream 163276 29223316 ~ 29228983 (+)
AMCG00010420 NA coding downstream 189412 29249452 ~ 29251205 (+)
AMCG00010422 NA coding downstream 213171 29273211 ~ 29283590 (+)
AMCG00010425 rfk coding downstream 255260 29315300 ~ 29317556 (+)
G80491 NA non-coding upstream 24713 28956272 ~ 29023473 (+)
G80489 NA non-coding upstream 53724 28900169 ~ 28994462 (+)
G80487 NA non-coding upstream 169827 28877824 ~ 28878359 (+)
G80469 NA non-coding upstream 272723 28771227 ~ 28775463 (+)
G80468 NA non-coding upstream 322905 28725007 ~ 28725281 (+)
G80490 NA non-coding downstream 1744 29061784 ~ 29064373 (+)
G80519 NA non-coding downstream 49157 29109197 ~ 29110019 (+)
G80521 NA non-coding downstream 55792 29115832 ~ 29118058 (+)
G80567 NA non-coding downstream 238118 29298158 ~ 29303550 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding downstream 292114 29352154 ~ 29357030 (+)
AMCG00010407 NA other upstream 782743 28242989 ~ 28265443 (+)
G80326 NA other upstream 1141357 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1173255 27869439 ~ 27874931 (+)
G80249 NA other upstream 1491179 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 2645166 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 434523 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 1706297 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 3413993 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 4843775 33903815 ~ 33938237 (+)
G81496 NA other downstream 5641398 34701438 ~ 34707394 (+)

Expression


Co-expression Network