AMCG00010434


Basic Information

Item Value
gene id AMCG00010434
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29527784 ~ 29551538 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010434
CAATGAACAGGATTTCTGAGCTCCACCATTTCGATGTGAGTTCTCCTGTTTTTCCAGTGCCAAGTCTGTTGCTTGGTTTTTGGCAACTAAGATGtccAGAATATCATGGATTGAAGAAACATTCTGCAAAAGGgaatgtatgaaatatatacCAACATCGAGAGATCCGCACAGATGCAATCCAGGATGCCAGGTGTGCCAAAACTTAATCAGGTGTTGCTGTGGTCGGCTGATCGGAGAGCACTGGGGTTTAGACTTCACCTCCCCAACCCACCTGTCGGTCCCGGCAAGTGAGAATGAGGAATGGTCCATTGAGCGGAACACCCTTGCCAGTCCCACAGATGCCTTTGGCACCATTGACTTTCAAGATGGAGCTCGTTCCTCTCGTGCCAAGtacatCAGAGTTTCATATGATACCAAATTAGACCAGCTGTTACACTTAATGGTGAAGGAATGGCAGATGGATCTGCCAAAACTGGTGATTTCAGTCCATGGTGGCAATCAGAACTTCGAACTGTCTCCGAAGGTTAAACAGATCTTTGGAAAGGGACTGATGACAGCTGCGGAAACAACCGGAGCCTGGATAGTGACTCAAGGCACTAACACAGgaaTATCAAGACATGTTGTCTGTCTCTATCAAACATTGGGCAACCCCCTGAGCAAACTGATGTGCCTTAATAGTATGCACTCTCACTTTATCCTGGTGGATGATGGGACTGTTTATAAATACGGGAATGAGATGAGCCTGAGGAGAAAACTGGAAAAGTACATTGGACTTCAAAAAATTCACTCTAGGTTGGGTCAAGGTGTTCCTGTGGTAGGTGTGGTGGTGGAAGGTGGCCCGAATGTGGTGCAGGTGGTGTGGGAGTATCTGAGGAGAACTCCCCCTGTGCCCGTGGTCGTCTACGAGGGGACCGGCAGGGCTGCAGACCTCCTGGCTTTTGTGCACAAACAGACAGCCGATGACAGgcaTCTCAATCCAGATATCAAAGAAGACATCATTGTTATGATCCAAAACACCTTCAATTTTGGAAAGACACAATCGCATTACCTTTATGAAATTCTAATGGAATGTATGGAGTACCGAGATTCCATAACTATCTTTGATGCTGAATCAGAAGATCAGCAAGATATAGGCACAGCTATACTGGCTGCATTGCTAAAAGGGACCAATGCCTCTGCATCTGATCAGCTGAACATTGCACTGGCATGGGATAGCGTGGATATTGCTAAGAAGCACATTTTAGTGTATGGACAGCACTGGAAGGTGGGGTCCCTGGAGCAGGTCATGCTGGACGCCCTTGTGATGGACAGAGTGAGCTTTGTGAAGCTGCTGATAGAGAACGGCATGTGCATGAACCGCTTCCTCACGGTGTCCCGGCTGGAGGAGCTCTACAACACGCAGCAGGGACCAACAAATAGTGTCCTGTATCATCTTGTGAGAGAAGTGAAGCAGGGCCATCTTCCCCCAGGTTACAAGGTGTCACTGATTGATGTCGGGCTGGTGATTGAGTACTTAATTGGGGGAGCGTATCAGAGCACATATACACGCAAGCATTTCCGAGTTCTTTACAATAGCCTTTACAGGCAAAGAAAGAAAGTTAGTCAAGCCGATTCTGTGAACTTTAACACACAGAGCAAACAATTCAACagcaaaattgaaaatgaagacAGTATTCCACAATCACATTTCTTCAGAATGGCTCAGCCGTACAAATGCAAGGAAAAACATGTGTTTCATCATAAGTCAGAAAAGAAGCAGAAAGACGAATTGTTTTTCCCCCAAGAGAATGAAGCTCCGGTGTTCACGTACAGCTTcaatgatttgtttgtgtgggCAGTGCTAATGAAGAGACAGAAAATGGCTCTTTTCCTGTGGCAGCACGGAGAAGAGGCTATGGCTAGGGCAGTGGTGGCTTGCAAACTGTACCGCTCCATGGCATATGAAGCCAAGCAGAGCAACATGGGAGACAACACTTTTGAAGAGTTAAAGACATATTCACTAGAGTTTGGGGAGCTGGCCGTGGATGTTTTGGACAATGCTTTCAGGCAAAATGAGAGGATGGCCATGAAACTGCTGACCTATGAAATGAAGAACTGGAGCAACTTCACGTGCCTGAAGATGGCAGTGTCGTCTGGGCTGCGGCGCTTTGTGTCTCACACCTGCACGCAGATGCTACTCACAGACCTGTGGATGGGCCGACTGAACATGAGGAAGAACTCCTGGTTTAAGGTGATTTTGAGCATCCTGTTGCCTCCCACCATTTTGATGCTGGAGTTCAAAAGTAAAGCAGAGATGTCCCACATTCCCCAGTCACAGGAGTACCAGTTCAGCTGGGAGAGTGCGAATCATGGGCCTCAAAGCAAAGACCATTCACTAGAGAAGGAGTATGATCCTGAGAAGGGACATAAAAAAGCAGAGTTCACAGACCAACAGAAAGGGATTTTCTGGACAAGGAAGATCTATGAATTCTACAATGCACCTATTGTGAAGTTTTGGTTTCACACGATGGCCTATGTGATCTTCCTGATGCTGTTCACATACACTGTCCTGGTGAAAATGGGGCCTGAACCATCTGTCCAGGAGTGGCTGGtcattttctatattttcacCACAGCAATTGAGAAAGTCAGAGAGGTCCTCTTGTCGGAGCCAGGAAAACTCAGTAAGAAGATAAACGTCTGGTTCAGTGAGTACTGGAACATCACAGACGTCTTAGCCATTGTGCTTTTTGTCATTGGCTTTGCACTGAGATGGAAAGATCAGCCACTGCAGACATTAGGACGAATAATTTACTGCCTGGATATTATTTTCTGGTATGTGCGGCTTCTGGACTTGTTTGCAGTAAACCAACATGCAGGCCCATATCTGACCATGATAGCTAAGATGactaaaaacatgttttacattgtgaTAATGATGGCAATTGTACTGCTTAGCTTTGGGGTGTCCAGAAAGGCTCTTCTTTCACCAGATGAGCCCCCTTCCTGGGTACTGGCTAAAGATGTCGTGTTCCAGCCATACTGGATGATATTTGGTGAAGTGTACGCCGGTGAAATTGATGCTTGTGCAGAAGACCAGCCATGCCCTCCTGGTGCCTTCTTAACGCCATTCCTGCAAGCAGTCTACTTGTTTTTTCAATACATCATAATGGTCAATACCCTAATAGCCTTCTTCAACAATGTGTACTTTGATATGAAATCTATATCCAACAAATTATGGAAGTATAATCGGTACCGATACATCATGACTTATCACGGAAAGCCATGGCTGCCACCCCCTCTCATCCTGTTGAGTCACATGACCCTTTCTGTCTTGCACATCTATCAACACCGATCAAAGGAACTGGCACTAGATGATGGTTTTGGACTGAAGCTTTACTTGAGCAGTGACGATCTGAAGAagcttcatgattttgaagaaaaatgtgttgtgcGATACTTTCATGAGAAGAATGAGAACTTCCACTGCAGTGATACCAATAGAATAAAGTCCACAACCGAAAAGGTTGAGGAGCTTTGTGAGCAGTTAAAAGAGGTTGCAGAGAAAGTTTATTTCATCAAAGACACTCTGCAGTCTCTGGACAGTCACTTGGGTCATCTGCAGGACCTTTCTGCCCTGACAGTGGACACCCTGACTGTCATATCTGCAGCTGATAGCTTGAAAGTAGAGGAAGCCCTGCTGGGCCACGAAAGATACAGCTCCTGTAAAAAGCTCCCACATAGCTGGAGCAACATTGTGCACGTGAGGTCTGTGGAAAATGTTCACGATGACATTCAGAAGCAGTACTACAGCACCCCACCTTCTCTGCTGAGCAGCCTGGTCTATGGGCGGGAGCCACTGGACTGCGGCGATAACAAAGAGGAGGAACAATGGCGTCCTGATAGTCCAGACTTGAATACCCGGAAAGAggagggaagggagagagagccaGTACCCTTCACAGTCTCTGAAGATCATGAGGTCAATTGGAGGTGTGGAGCCCTCATGCCTTCATGTCTGAAGTCCTCAGCCATTACTAGAGATCATAAGAATATCTCCTTcccaaaaatgaaaaccctaTGCCTGTGTCCGACAGATTTCACAAAGAATGAAAGCATCCCCTCTGGCATACCCGTTCCTCTCCCGTGTGTTAAAAGTCTCTGTTCTGTAAAACACCCAGAGGAACATCAAACACAAAGAGTGATTTCTGAAAGTCATCTGCCCTGGAGCCAGAAGGAtgctggcaaaaaaaaagaatcccaCTACATCGAAACCCCCCTCTTTGCAGACTCTCATGGTGAAGAAAGCGCCAGGGGCTTTGTCAATCTGGCCTACAGTGAGGGCAGTGAACCTGGAATATTCCCGATAACCCAGATGAGACAGAGCATGGAGGGCTCATGCAAAAGAGACAAGAACTATGCCAGCTGGGCCCTCAAAATGGGTCAGTTCAGAGATAGTTATTCCTTGTTCAATAGCTCAGACAGTATGGAGTCATTGCCCACAAGGCAGCGAAGTTTTACATTGGTGTGTGACTCCCCTCTGGAAAGGGACAGCTGGTTGGTCGGGAGAAGCAACAGCCTGAGAGCCCAGGGAGCCAACAATCTGCAGAGCCCCAGCAAACACAAAgAAATGTCTAAATCTTCAGAAATATACCAAGTTCAGAAGCCACGAAAAAAAGTTCTTAAGAGAAAGGCTGTAAAAATACAAGAGAAAACTGCTGATTCTTCAGAGCCAGTGATATCAGGTGATAGATATTCACATGGTCCTCCCATGAATCTGGAAGCTGcaccaaagaaaacacaaaatctcAGGAGCAAAGGAAATATAAACATCTGGTCAAAACTACCCAGCTTCAGCCAACTAAATGTTGAACAGATTAACTTTATGGGAAAGAGGCTTCGTCATcatgaaagcaatgcaaactTGTTGCAGTCAAGTGAAATTTTCGGGTTTCCTGGTCAGGAGCAGGCCAGTGCCTCAGTGTGGAACAGTAGGACAAAAACGCTGAGCCGCAAATCTTCGGAGCAGAGTTTCATAGGAATCGATGcaAAGGGCTCTACATTTAAATCCACCGAAGACCTCGACCATcattattcagCTGGTGAGCAAGTGACCTTATACAGTCTGGAAGAGAGCTCACCAGCCACACTGGACAGGAGCATCTCCTCCTGGTCTCAGAGAGGTTTGGTTGCTCTGGTTCAGCCCTTGGCTCAGGAGGAGATGGACGGCGGGCTGCGGAGGGCCGTGACCGTGGTCTGCACCTGGTCGGAGGGCGATGTGTTGAAGCCAGGAGGTGTTTACATTGTGAAATCCTTCCGTCCTGAGGTGGTCAGGACATGGGAGAagatatttgaagaaaaaactatCCTTCATCTGTGTCTCAGGGAAATCCAGCAGCAAAGGGCTGCTCAAAAACTCATCCACATATTCAATCAAGTGAAACCCCATGCCATCCCCTATTCTCCAAGGTTCTTGGATGTCTCTTTGCTCTATTCCCACTCTGCTGATGAGTGGCTGACCatagagaagaaaataaatggagacTTCAAAAAGTACAACAATAACAACGGAGAAGAGATCACTCCAATGAATGTTCTGGATGAAACAGTGCTGGCTTTCTCTCATTGGACTTATGAGTATTCTAGGGGAGAACTCTTAGTCCTCGATCTACAAGGAGTCGGTGAAAACCTGACAGATCCTTCAGTCATCAAAGCAGAAGACAAACATGTCCAAGAAATGGTGTTTGGACCTGCCAATATTGGAGATGATGCTATCAAGAACTTCATCCAAAAACATCAGTGTAACACCTGCTGCAAAAAACTCAAACTTCCAGGGTAA

Function

GO: NA

KEGG:

id description
K04981 TRPM6, CHAK2; transient receptor potential cation channel subfamily M member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010434 True 5821 mRNA 0.46 38 29527784 29551538

Neighbor

gene id symbol gene type direction distance location
AMCG00010432 carnmt1,LOC107673371,LOC107599972 coding upstream 3268 29515759 ~ 29524516 (+)
AMCG00010433 NA coding upstream 14366 29509642 ~ 29513418 (+)
AMCG00010425 rfk coding upstream 210228 29315300 ~ 29317556 (+)
AMCG00010422 NA coding upstream 244194 29273211 ~ 29283590 (+)
AMCG00010420 NA coding upstream 276579 29249452 ~ 29251205 (+)
AMCG00010437 NA coding downstream 247702 29799240 ~ 29814090 (+)
AMCG00010441 NA coding downstream 297857 29849395 ~ 29864398 (+)
AMCG00010440 NA coding downstream 363055 29914593 ~ 29926083 (+)
AMCG00010448 abhd17b,LOC103022021,LOC107599913,LOC106580059 coding downstream 430652 29982190 ~ 29983125 (+)
AMCG00010447 NA coding downstream 440394 29991932 ~ 30021803 (+)
G80599 NA non-coding upstream 43443 29483291 ~ 29484341 (+)
G80595 NA non-coding upstream 69806 29443110 ~ 29457978 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding upstream 170754 29352154 ~ 29357030 (+)
G80567 NA non-coding upstream 224234 29298158 ~ 29303550 (+)
G80521 NA non-coding upstream 409726 29115832 ~ 29118058 (+)
G80652 NA non-coding downstream 219889 29771427 ~ 29775799 (+)
G80663 NA non-coding downstream 307235 29858773 ~ 29860382 (+)
G80746 NA non-coding downstream 754947 30306485 ~ 30307387 (+)
G80830 NA non-coding downstream 965735 30517273 ~ 30519628 (+)
G80969 NA non-coding downstream 1495188 31046726 ~ 31070527 (+)
AMCG00010431 NA other upstream 24261 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 1262341 28242989 ~ 28265443 (+)
G80326 NA other upstream 1620955 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1652853 27869439 ~ 27874931 (+)
G80249 NA other upstream 1970777 27556415 ~ 27557007 (+)
AMCG00010467 NA other downstream 1214799 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 2922495 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 4352277 33903815 ~ 33938237 (+)
G81496 NA other downstream 5149900 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 5204981 34756519 ~ 34845876 (+)

Expression


Co-expression Network