AMCG00010440


Basic Information

Item Value
gene id AMCG00010440
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29914593 ~ 29926083 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010440
CAGACGCCGAATTCATATTCGAGAAACCGGAGACACAGAAGACAAGAGCTGCTACAATATCAGGACGGACAACGACCACTATCCGCGGAGGAAAGCCAAACCACATATTGTATAATCCAAATTTTAATCATCAGcctgGATTTGAGCCGTGCCACATTTTGGTGGCGGTTTACAGACAGATTGGCTTTCCTCTTACAATTGGACATCAAGCATACCAGAGAACTTCTGTTCAAAATTTCAAGATTCCTTAATTGGATTACAGGAAACATGGGATATAAATCAAAACCAGATGCTCTTGGATGAAACATGGTAAATTGTGTGTGGTGTAAAATCTACACCAAGCAAGTGTTGCTGGATCCACTTTGAATACAGTAAAGTCTTTCtagtacagaaaacaaaccaaacaagtGGGCCATATCTTGTGCAGTCTGCACCAGGAGCAAGTTATCAAATCTTCTAGCTCTTCTGGACTTCTAAAAATCTAAGTAGAGGAATCAATACAGTAGGATACCAGCACGCTAAAGAGGCctacaaaaagacaaacaattgGCTTATCTTCTTTCATGCCTCTTTCCAAGGTAAGTTTGAAAGTGTTTTCTTCTACAGTACTATGTATTTGCTGTTGcaaattttaatttctttatgcGTCTGACTACTTTAGAGGAAACTGGTTCCCACACATGCAAATGAGGAGGGTAGTGGTAGGATTCtccttggattttttttttttcttcctcctgtgtataatacaaatattggaAGGAAATtcatatttctgaatatctggGTATGCTTATTGCTCTTCATAATTTCAATGTCTCCCTCTGCTTTATATTCCTTATAATATAGATGGAATAGTCTGGGTGTTCGATATAGTTTGAATTCCTAACTTTTGAAAGTCATTCTGTGTAATTGCTTTGTCAATGCCACATCAGATGTTTTTCAAAGCCCTGGAATACTGTATCATCACAGTTCCCAGAAAATGTCCAGCATGTTTAAACTGCAAGAGTCTGAAACTGAACATGATGACTAAACCTGGAGGTGATAGTGGGAACATTGTAATGTGTTGCTGGGACTTCTGCCAAATCAGTGGGACATCTCAGTCGAGCATTTTTACTGCTTTTGCTTCTTTAAAGCTTTCTTAAATCTATTGGAGCTctggaatattaaataaatcctcCCGCCCACCTTCACTGAACAGCAGGAGTCTTCACTCTTCAGTCATTTCAACACATAAGCCTAAATATTTTCTTCGTCCCTTTGCATGGCTGTCGACATCAGGACCTCTTTATTGTACAAGGCCATGCCACTGGGTCTAGCAGTTTGTCTgctatattttttgtttggtctGTGAAGATTGCCCATTTTAATAAGgcgggtctctctctctctcaagtgTGCATTTAGATCCATAAATAGCATACCTCCCAGAAGAATTTGTTGAATAGGCAAGAGACCGTAAAAGTCCattcaaatgttaataaaaaaaatctgggagttttgattttttttttttttccttttgtcatCAGAATTGCTAACATCGTTGTCTTTATCAAAAAGATTGCAATGCGGATGAGATCTTTGTGCTGTCCTCGATTGATTTTGTGTGCTTTCCAACTCCTAATGGCTTTTTGCTGGTTTCTTTTACAGCATCAACAGCATACAGATATGGCCCAAGAGACGAACCAGAGCCCGGTGCCCATGCTGTGTACAACCGGCTGCGGCTTTTATGGGAATCCTAGGACAAACGGGATGTGCTCGGTGTGCTACAAAGACTACTTGACCAGGCAGCAGAGCAGTGGCAGGATGAGTCCAATGAGCCCGATTGGTGCTGGCAGTGTATCCAGTAGTCCTTCTTCAGAAGCCTCTGCTATCCAGAGAATAGAAGCCAGCTTAAGTAACTCGGACGTCTCTTCTGTTAGTGTAGCCGATTCATCAAGAAGTATGCCAGGTGCCTCCTTGCCAGTAACACAACAGATGACCGAAATGAGCATTTCCAGGGAGGACAAGGTGACATCCCCAAAAGGAGAGCCAGCAGAACCAgtTGTAACGCAGCCGACTGCTTCAACTTCACACCCCAGTGCACCAGGGAGTGATGAGACGAAGGCTCCAGAAATGCCCAAAACTAAGAAAAATAGATGTTTTATGTGCAGGAAGAAGGTCGGCTTAACAGGTTTTGATTGCCGGTGTGGGAACTTGTTTTGTGGACTGCACCGTTATTCAGACAAGCACAACTGTCCTTACGATTACAAAGCAGAAGCGGCTGCAAAGatcagaaaagaaaaccctGTTATTGTTGCTGACAAAATCCAGAGAATATAAGGTCCACAGCCTTATGACACAGAACACTGTTGAGTGGATAAAGGACTAATTTTTTTATTACGATCTTGAGAATCCTATACAGAGCAGATGCATGAAcgatcacttttttttttttcttatttgatgttcatttattttttttctttgtatcttttatctattgtttaaaattatatacaagattaaaaaaaaaaaaaaaaaaaaaaaaagtgcagccCAGGGCATCATTTCAGGAAATCTCATTACTGTCCTCCAGCCTTTAATGTCCTCTATGTTCagctatgtttatttatatttgtgccAAAAAAGTCTTTAATCAAATCTcatgggtttgtttttgttgttggaaTGCAAAAATGTTGGCTTGAAAAGGTCCAAAAGCCTACATTGCTTCAAACAAAGTATCcgcaaaacaaatgtttgtttgttttaaggtaAAAttgaagttttaaatgttttttgttttgttttttttaactttgaagAATGAGCAGCAGTCAGTCTTTCTGGTCCATCATTTAGTGTCTCGTAATGCTAGCAGTCCTGTCCCCACATTCACACTCCACATCTCGTGACTGAGGAGCCTGATGTATTTCACAGTTTGTGTAAATTGCAGCAAATCGAAGCCCCACCCACAGCAGATGTGCACCTTGTTGATCTCATGTCAAAGTAACTTGCTTTTTGTGCATCCGACATGGTTTAACTTCTTGCTTAAGGCCAGTGTAAGACTTCCTACACTAGAGCGTACCCCTGTACAGTAATATGGTGAAGTGTTGAGATCAGAGCTGTGTTGACCCTTCCAGAGCCCACTTAAAGATCCTTGGTCTTTCACTTCATCTCGGGTTACTGTATATCTTGATATGAGGCCAAAATCCCTTATTGTGGAGTTGCAGCAGAACTAGTGAAACCTTGTTCGTGCCATACATTTGTCAATGTTATGTGGTACTTTAAGAATGTTTAATGCAGACATATGGAActaatgtctttgttttgttttgcccaCCTGTTAAAGTACTGAAACACCATCctatatttattgaaaaaagaaatagtatgcataaaacaaaatataattacttgCTAAAATAAGTGTCATGTCAGTGGTTCTTGCCCTCACGTTGCTTTTGTTACATGAAAGATTGGCCTCAAAGGAGAATAGTGACTAAAACAGGTATGCAGCTTATATATTATAAGTCATTAAGAATGTGATGGTCATTTGATGCCTGAAACCATGCCCAATTAGCctgcctttttctgtttttacttgGGTGTAAGAGTGTAGTATTATTGGGTGTATTGCATGGATTGCATATCTACGACAATGTAAATATCTGATTTGTAGAAATGGCAATATACTTCACTAATGCTTGTTCAATATTTTCACCTCTGTAATGAAAGGTTTTTGTAATGTCTAGAGGTTGTGCTGATATTTACGTATatattatgtgtatgtgtacttAATGGGTATGTGAAACACGCTATGTATACACACACGTGCATACGGGGGTCATGCAAACTGCTGCACAAGCTCAGTCATCTATTCAGCAGCTTGACTGGCTTCCTCTTTCTGGAATTAAGAAAGGGTTTTCTTAGAGCCTTGAGAATTTAACTGCATTACAAGTTTACAAGGCTAAAGCAACATTTACAAgtggatgtttgttttgttaatacgGAATTTCAATTTTAGTCTTTTTAATAAAGTTGCTTTGAATCCCACTTCAGATGTTAGATTTCTCTACTTACTGAAATATGCAGCAAAACATTTGGACcccagtatatatgtatacctaTTATACAAATTAGCAGTGTGATAACACATTCttgtatatagatttttttttttttttttttaattctatttgttcgaactttttctttttggctgCTCAGCACTGTTTTTCCTGTAGGGATGTGAGGTTTTGCTTTAAAGAATTGTATGTATccattcagttttaattttaactttagtTATGCAAATTTGTACAAAGTGtgttcatatttatgtattgcatATACTCTTGTTACTTGGCATTAATGCAAAATTGTatcatgtaaataaaattatgtaCAGAGAGACATTATAAAGCTTTGCCACACTGCTTATTTAAAACAACTGTCCCTACATATAGATCTGTATCTGCAGTTTTCCATATTGTTCAGTGTTTTCAAGCAAGCAAGATAATGGATCCTTCCTTTGTGTCCTTTTTGGAATTCATTTCATAGCATCTGATGTCTACTGCTCTGTTCCTAATGCAAGTCTCAATTTTATGAGAATAGGAGAGCTTCTAGCTTTCACAGTCCCTATTGGTTTTCCTTGC

Function

GO: NA

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010440 True 4643 mRNA 0.38 6 29914593 29926083

Neighbor

gene id symbol gene type direction distance location
AMCG00010441 NA coding upstream 50195 29849395 ~ 29864398 (+)
AMCG00010437 NA coding upstream 100503 29799240 ~ 29814090 (+)
AMCG00010434 NA coding upstream 363055 29527784 ~ 29551538 (+)
AMCG00010432 carnmt1,LOC107673371,LOC107599972 coding upstream 390077 29515759 ~ 29524516 (+)
AMCG00010433 NA coding upstream 401175 29509642 ~ 29513418 (+)
AMCG00010448 abhd17b,LOC103022021,LOC107599913,LOC106580059 coding downstream 56107 29982190 ~ 29983125 (+)
AMCG00010447 NA coding downstream 65849 29991932 ~ 30021803 (+)
AMCG00010449 LOC107393780,LOC105014492 coding downstream 260853 30186936 ~ 30208135 (+)
AMCG00010446 trpm3,LOC108434489,LOC108255677 coding downstream 299608 30225691 ~ 30253139 (+)
AMCG00010445 NA coding downstream 338640 30264723 ~ 30271663 (+)
G80663 NA non-coding upstream 54211 29858773 ~ 29860382 (+)
G80652 NA non-coding upstream 138794 29771427 ~ 29775799 (+)
G80599 NA non-coding upstream 430252 29483291 ~ 29484341 (+)
G80595 NA non-coding upstream 456615 29443110 ~ 29457978 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding upstream 557563 29352154 ~ 29357030 (+)
G80746 NA non-coding downstream 380402 30306485 ~ 30307387 (+)
G80830 NA non-coding downstream 591190 30517273 ~ 30519628 (+)
G80969 NA non-coding downstream 1120643 31046726 ~ 31070527 (+)
G80988 NA non-coding downstream 1180977 31107060 ~ 31107603 (+)
G80989 NA non-coding downstream 1183685 31109768 ~ 31110142 (+)
AMCG00010431 NA other upstream 411070 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 1649150 28242989 ~ 28265443 (+)
G80326 NA other upstream 2007764 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 2039662 27869439 ~ 27874931 (+)
G80249 NA other upstream 2357586 27556415 ~ 27557007 (+)
AMCG00010467 NA other downstream 840254 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 2547950 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 3977732 33903815 ~ 33938237 (+)
G81496 NA other downstream 4775355 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 4830436 34756519 ~ 34845876 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G251404 NA non-coding NW_019171430.1 APWO02001028.1 52911 ~ 53883 (+)