AMCG00010447


Basic Information

Item Value
gene id AMCG00010447
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29991932 ~ 30021803 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010447
CTGATGTCAATCTCCAATGCAAATCTCACGTCTCACTTCCTTTGCAAATCCGCTTCTGGGATGGGGGCTGGCGGAGTTCGCTCTTAACCGAGGAAAAGCAGCATGTAAAGAGTCCCGGAGCGGCGGAAAGGACTCAGAGTGCGCGCCGGTGCAGCTCCACGCCgccggacggacggacggacggacggacggactcGGGCTGAAGACGCGGACGGCAGCGGGGCTCCGAGCGGCAACTGATACCATGCAGATGAATAATGCCCAAAGAAACTCCCCTGTGTTTCTGCCACCTTCCAATGGGAACAGTCACAGATCCCCAGGGTACGTGCCTGGGAGGATCGTCCCAGTCCGATCCCCACCCCCGCCCAAGATCCACCCCTCGCAGAAGTCCTCCTCCGAGGCTCGCACGGGTCACAGCAGCTTCACATTCACTGTGGAGGAGCAGAAAAGAGGACGAGCAGAGGAGctgaagaagaggaaaaaaacactgatctGCTGTGCCTGCTctatgtgtgttttctttctagTGCTTATCCTTATTCTCAGCTTGACCAAAAAAGGCGTTATTGATGAAAACTGCCCAGACCACAACCCTTCCCTTAGGAACTGGAATCCAGGACATGACTTACAGAGAGCCGTAATTATCAGAAAAGGAGATTTGTTTCGCCTGGACTCATCTGCTACATTTCTCTCTCTaatcatccaggaaggaggttTACTGGTATTTTCTGACAATGCAGAGGGTTCCAAGAACATCACTTTAAGAGCTCGATACATCCTCATAGAGGAAGGGGGTGCTCTTCATATTGGAGCACCCAAGTGTCGCTACCGATCCAAAGCCACTATCACCTTGGTTGGCAGGTCAGACGAAGGCGAGGCAGTGCCCGTGTTTGGGAGGAAGTTCATTGGAGTCAAAGCAGGGGGCACTCTGGAACTGCATGGCACCGAGAAGCTCTCCTGGACTCTTCTGACTAAAACCCTGGTGCCTTCTGGCCTGGTTGCTGGAGGGCATGCCTTCGAGAAGAATTTCAGCAGAGGGTTAAATGTGCGAGTGATTGACCAAGACACGGCAGAGGTGTTGGTCATGGACAGGTTTGATACCCATGATCTGAAAAACGACAGTAGGAGGCTTCACGAGCTGCTCAAATCGCTGCCAGCTGGACGCATTGTGGCATTAGCAGTGGGTGACTCAGCTGTGAAGAGTTTGCTAGAGGAGACCAAGAGAACCATACAGAATTTACTGGGAAGCTCTTTTGtcaacaatttaaaatacagGCCTGGGCTCTGGTTGCCGTTCTTGGTGGCGGTAATGCCTCCTGTAGTGAAGAAGTCCGTGAGCATGAAAACCATGATACCGGAGGACAAGCTGTGGCCCGAAAGGAGTTTATTACAGTGGATGGAGTCAAATTTTTTGTCACCGCCTACAGTGAATGGAGAAATGGTGGATGTTGTGGATGGGGTGGTGTTGCACCTAATGGATGACGCTCAGAGCTGGAGTCCCGGTGACCAGATTGTTGTTGCCAGCACCGACTACTCCATGCACCAAGCAGAGACGTTCCTGCTCCTGCCTTGCCCAGAGTGCAGCAAGAATCAGGTCAAAGTTCAAGGAAAGCCCCAGTTCACACACGTAGGTGAAATCATTGATGGAATTGATATGAGAGCGGAAGTTGGTCTTCTGACCAGGAACATCCTTATCCATGGGGAGATGGAAAATTCCTGCTATGGAAACAATCTGTGCCAGTTCTTCAGCTATGATACCTTTGGGGGACACATTAAGATTATCCGAAATTTTACATCTGTGCATTTGTCTCATGTTGAGCTGAAGAACATGGGTCAGCAAGTGATGGGCAGCTACCCAGTGCACTTTCACTTGTGTGGAGATGTGGATGAGAATGGTGGGTATAGCCCCCCAACATCCATAGAGGCTCTGTCCATTCACCACTGCTTTTCTCGCTGCGTCACTATCCATGCCACCAATGGCCTTCTGATAAAGGACACTGTAGGTTATGACACACTGGGACATTGTTTTTTCCTGGAGGATGGAATCGAACAGAGAAACACCCTGTACCACAACCTGGGGCTGGTGACCAAGCCTGGCACACTGCTACCTACAGACAGGAATGATACTATGTGCACTTCTATCAGAAACAAAGTGTATGGAAAGTATGTTCCTGTGCCAGCAACCGACTGCAAGGCAGTGTCTACATTCTGGATTGCCAATCCCAACAATCATTTAATCAACAATGCTGCTGCAGGCTCCCAGGCTGGGCTTTTCATCGACAAGGGTGTTAAAACAACCAATGCAAGTGCAACAGACCAAAGGGAATATTTGTGTTTGGATAACAACGCCAGGTTCCGGCCCCATCAAGACGCTGACCCAAAGAAGCCCCGTGTCCTCGCTGTCATCGACAGCCTAATATCCTTCAAGAACAACGACCTGGGAGCTTGGATCAGAGGAGGGGACATCCTCATTCAAAACTCAGGCGATGGAAGCTTCCCTAAAGATGAGGGATCCCGTCAAGAGGTGACCGAGTCCCTGTTTGTTGGGGAAAGCAAAAACTACGGCTTCAATGGTGGACTGAACAAGTACTGGGGAGCAGGCGGcgctgaaaacaaaaccaggacTCTGCCCAGGAACAAGACCTTCCCCATCCGAGGGTTTCAGATCTACGATGGGCCAGTTCACCTCAGGAACAGCACCTTTAAGAGCTATGTGCCAACTGCTGACCGATACACCAGTGCGGTGGGCTTCTTTCTGAAGAACCCTTGGCAGCTCACACCTAAGAACAACATTACATCTGTCAAGTTTGAAGCCAGTGTGTCTTTGAAGGTATTCTTTGGGAAGAACGGTTCATGGTTTGAAGAAAATGAACTGGATGGGGACAAGAATTCAATATTCCATGATGTTGATGGTTCTGTCACAGGATATAAAGATGTCTATGTGGGTCGAATGGATAACCATCTGATTCGTCACCCTAAATGTATCAACATCACTCAGTGGAATGGAGTAATATGTAGTGGCAGGTATTCTCAGGTCTTTATGCAGACCTGGGGCTCTCAGAATTTGAGTCTATCTATATCCAGGGATGAGTACCCATACAATCCTATGGTGCTGAGGGGAATCAACACCCAGCGGGCCCCTTTCCAGCAGTACCAGCCAGTAATGATGATCGGCAAAAGCTACACTGTCCACTGGAATGGGAATGCGCCCAAAGAGACAGTGCTGTACCTCATTAATTTTGACAAAGATGACTGGGTTCAAGTGGGCCTTTGCTACCCTGCTGACACCACATTTCAGATTATGTCTGATATCTACGAGAGGCAGACCAACAGCTTTGACCATATAGAAGACTACGGACCAATCAGCTCCCTGGAGGAGTTACAGAAGAGACCACTGGACAGGAAGTATTATTTTGACAACAACACAGGgCTCTTGTGGCTTTTCCTTCGTGCGAGACACAGCAGAGACGGCCACAGTTACTGCTCCAGTCAGGGCTGTGAGCGCCTGAAAATCACCGCCACAACCAAATCTAAGGAAATCAGCAATTGTGTGGCAAAAGCTTATCCAAAGTATTCAAAAGAGCCAAAGCCTATTATACCAATGCCACCCAAGATTACAACACTTCGTGAAAACTGTGGATCTTCTAAggtgGTCTTCACAAGTGATCCTCACAAAACCTACCTCCAAGTTCAGATCAAATCTCTCACCAGCGAAGAGATTCAAAAAGGCGATAATGAGTCATTCATTACTGTAAATGGTGAAAAGGTCCCCTTTACAGCATCTGGTTTTTTTCTGGTCACTGTGGATGCTTGCACTGGCAAAGTAACAAAGAAAACCTTGTTCCCTGAGCTGGATCCCAGAatgaaacagcattttaaaactggAATCCCCAACAGGTCAATTGTTCTTCTTGGAACTAGAAACAAACCGAAAGGGTATGAAAGTGTTGCACAATATCTGGTCTTACTGGGAACAGCCAAAGAGGCAGATCTACAAAGtaaagAAAGCTTGGCCTTTTTTGGATTCCATGGACAAGTTAAACCCTCCTGGGTTATGCTTTTTACGGGTCTGAAAGGAGAGAAGCTTGGGCTACAAGAGAAATACATTCCTTTACAACTGGAAGAATACTCCTGCACCAAAGCAGAGTCCCCAAAAAGGAAAGATTGGGAACTTCTAAAGAAAGCTTTAAGcaaaaaataatctgcaaatGTGAATAGAACGAATGTGAACTTactaacttattttatttatgtgatttCAAGGAGGATGTTTACCAATTGTTTATGTTGTTCAAAGGGTATTTGTGTATTGTTGCAAACCAAAATATTTCCTATACCATATGATGCACTTTCTCTCAGACAAATCGATGCCCACACTCTTATTACAGTTCAGGGCCACATTTTTGTGGAATGAAGAAATCTGTGATTAAAACTAAGCCCCCCAAATCGTAAATAATACTTTGATCTGGCTTGTCTTCCTCCCAGTCTGAAACTATTTAGATTTTTGAAGATATTTAGAACATGTTTTCACAAAACGGGTTACGtttgtatgaaaaataatttagttgtttattaaacaaaaaagaaaaatgaaagggaAATTTTTGCCACAAGATTAGCATTTTTGCACATCTCAAGGTTCATGCAACAATCTCTGCTATTGTTTGTAGACTTTTACAAGATTAATTGTAAATCTAAATGTTGCTTGTATACCAGTGGGATTTTAAAAGATGGTAACATGCAGTTTACCAATGTATGTAATGTGCAATAGACTATACATACTGTGGGAATAGGTGTTCCTTGTTCACATCACGTTTTcaaaataagcttttaaaatgatgttaGACAGCATATTATGTTTTGATTACTACAGTTCCATAAATGCAGTAAAAGCTGCAGTAAGAGGAACTAGGTAGAAGTTTGGCTTTATGTAGTAAAATACTGATTGTTTAAGGttgacattgttgtttttgatataaagcagatttttgttttttctggagTCAATGAAGCAGAATCTTTAACTCggtttatgatttaaaaagaaaacactttttttttttcttcaatttaagATTACTGCCAAACACTgtataaacatttgtttcttcacccaacaaaatgtattttcccaaatacttttgtttttaaaccaaaatattaactttgtccatagggtttttttttgtcctttttttaatacaggagcaggactccttgttctgcATTTAGtgaagtttatatttttcagaatatgaatatcTTTATCTACAGAAGTTCATAATTGCAACCATTACAACAGCTGCTATTAAATTTTGCTTTACTGAAATACCATGAATATAATTAATCACAACAAACATATGTCAATTGTAATTCAGCTACATTCAACAATTAGCTAGTTTATTACTGTTATAAACATTTTGGAGAACTTAACAATTGAAAGAACAAGCCTAATTTGTAACCACTGTGCTGTATCAGTTTTTCAAATGCTTAAAGAGGGACAATACTATTGGCTGTAGATGAATTAATTTTCCAATCAGGATTTTActgcaaaaccaaaaaatgaatattGGATAAAGTTCGGTCTTAACATTAGTGCATTTTATGAtgagtgctttttttttttttttttttaactgtttttatattaaatctgatgtatgtttttttttaatgttgaattattcctactttaaatgtaacatttaagaATCTAActgtagaaaatatatttcacatacatcCTTCTGAGAGCAGTTAGGTTAGAATAAATTTAAATTTCTTTGTGGTAGATGTGTTGAAATTGGTTGTggttgtgcatgtgtgtgcgtgtatatgaGATCTATTGCCTGTGGTGCCTAAAATTGTATCCTGTTATGAGGatattttttaaggattttgaaatgaaagccaaaaacaacaaatgtaaaaacatttatactTTGTCATAATAAAACCAAGTTCATgaaa

Function

GO: NA

KEGG:

id description
K22144 TEME2; cell surface hyaluronidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010447 True 5970 mRNA 0.43 22 29991932 30021803

Neighbor

gene id symbol gene type direction distance location
AMCG00010448 abhd17b,LOC103022021,LOC107599913,LOC106580059 coding upstream 8807 29982190 ~ 29983125 (+)
AMCG00010440 NA coding upstream 65849 29914593 ~ 29926083 (+)
AMCG00010441 NA coding upstream 127534 29849395 ~ 29864398 (+)
AMCG00010437 NA coding upstream 177842 29799240 ~ 29814090 (+)
AMCG00010434 NA coding upstream 440394 29527784 ~ 29551538 (+)
AMCG00010449 LOC107393780,LOC105014492 coding downstream 165133 30186936 ~ 30208135 (+)
AMCG00010446 trpm3,LOC108434489,LOC108255677 coding downstream 203888 30225691 ~ 30253139 (+)
AMCG00010445 NA coding downstream 242920 30264723 ~ 30271663 (+)
AMCG00010450 LOC106943757 coding downstream 310190 30331993 ~ 30344815 (+)
AMCG00010455 apba1,apba2 coding downstream 381701 30403504 ~ 30429312 (+)
G80663 NA non-coding upstream 131550 29858773 ~ 29860382 (+)
G80652 NA non-coding upstream 216133 29771427 ~ 29775799 (+)
G80599 NA non-coding upstream 507591 29483291 ~ 29484341 (+)
G80595 NA non-coding upstream 533954 29443110 ~ 29457978 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding upstream 634902 29352154 ~ 29357030 (+)
G80746 NA non-coding downstream 284682 30306485 ~ 30307387 (+)
G80830 NA non-coding downstream 495470 30517273 ~ 30519628 (+)
G80969 NA non-coding downstream 1024923 31046726 ~ 31070527 (+)
G80988 NA non-coding downstream 1085257 31107060 ~ 31107603 (+)
G80989 NA non-coding downstream 1087965 31109768 ~ 31110142 (+)
AMCG00010431 NA other upstream 488409 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 1726489 28242989 ~ 28265443 (+)
G80326 NA other upstream 2085103 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 2117001 27869439 ~ 27874931 (+)
G80249 NA other upstream 2434925 27556415 ~ 27557007 (+)
AMCG00010467 NA other downstream 744534 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 2452230 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 3882012 33903815 ~ 33938237 (+)
G81496 NA other downstream 4679635 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 4734716 34756519 ~ 34845876 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_03192684_03218127 TMEM2 coding CI01000339 null 3192684 ~ 3218667 (+)