AMCG00010486 (LOC104966306,LOC106585191,LOC100702629,LOC103397673)


Basic Information

Item Value
gene id AMCG00010486
gene name LOC104966306,LOC106585191,LOC100702629,LOC103397673
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31429709 ~ 31589396 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010486
ATGTGTGTATTGGGCCAGGAGCCGGGCTCCAAGGTGGTAGCTGATCGCTATGCCGTCTACTGGAACAGCACCAACCCCAGAGCAACCAAAAATGAGGAAATTAGCTTGGAAAGCCGTGAACAGCATCTGGCCAACTCCATGGCTTTGGAGCGACAAcgacagagggagagagccaGACACTCCCAGCAGTCTGCAGTCAGGATCATTCTCAGCCACAATGGGAGCAGCTCACTTTTTCCATATGAGATCAGCTGCTTCCTATGTCACCTGACTGAGCTAATTGATCATGAAGAGGTCCCACTGCAGGGCAGGAGAGAGGGTGGTGGGAGGAGGTTCCAGAGAGGAGACTACCACATTGATGTGTGTATAAATGACTACTTGGATGTGTTTTGCCCTCATTATGAAGACACAGTGCCGGAAGACAAAACAGAGCGATATGTTCTCTACATGGTGAACTACGATGGATACAGTACGTGTGATCACACCGCCAAAGGCTTCAAGAGATGGGAGTGCAACCGCCCTCACTCCCCCAATGGACCACTCAAGTTCTCTGAAAAGTTCCAGCTTTTTACACCCTTTTCCTTGGGATTTGAATTCCGACCAGGCAGAGAATATTACTATATCTCAAACTGCAGGATCAAAGAACGGCATAGCCTGATTAAAGCCAGCTGGGAATGTGCACCGCAGGAAAACATGGATGGCTATGAGGTCAGcATCCACAATTGCCCAGAATGGGAGGAGAACCTGTCTGAAACTGAAAGTATGACACCGTACATGAGTCAGCTGAACCATCCCGAACGCCTGGTTTCCTCTGAGACGAAGGAACAGCAGAGATCTCCCCTGTACCGCCCGATCCGTGATGGGGACCTTCTCAAGGAACACTCTTTTGCAGATATTAAACTGCTCCTGGCAGCTATTCTGCCTATCCTGCTTTTCTGGGGCCAGAGCACCAGACGAATTGCTACTATTATTGAGGAAGATCCCAAAGTGAATGCCCTGGCGCTGACTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104966306

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010486 True 1011 mRNA 0.50 12 31429709 31589396

Neighbor

gene id symbol gene type direction distance location
AMCG00010483 NA coding upstream 310462 31114522 ~ 31119247 (+)
AMCG00010480 NA coding upstream 341775 31082883 ~ 31087934 (+)
AMCG00010477 NA coding upstream 358089 31064637 ~ 31071620 (+)
AMCG00010476 NA coding upstream 389516 31037640 ~ 31040193 (+)
AMCG00010475 NA coding upstream 416881 30993603 ~ 31012828 (+)
AMCG00010484 NA coding downstream 327188 31916584 ~ 31921133 (+)
AMCG00010485 NA coding downstream 335526 31924922 ~ 31938388 (+)
AMCG00010495 NA coding downstream 520511 32109907 ~ 32126004 (+)
AMCG00010496 NA coding downstream 572869 32162265 ~ 32173395 (+)
AMCG00010493 st8sia4,LOC100135820,LOC107737177 coding downstream 663045 32252441 ~ 32283770 (+)
G80989 NA non-coding upstream 319567 31109768 ~ 31110142 (+)
G80988 NA non-coding upstream 322106 31107060 ~ 31107603 (+)
G80969 NA non-coding upstream 359182 31046726 ~ 31070527 (+)
G80830 NA non-coding upstream 910081 30517273 ~ 30519628 (+)
G80746 NA non-coding upstream 1122322 30306485 ~ 30307387 (+)
G81026 NA non-coding downstream 182758 31772154 ~ 31772357 (+)
G81029 NA non-coding downstream 332353 31921749 ~ 31922050 (+)
G81089 NA non-coding downstream 716897 32306293 ~ 32308293 (+)
G81103 NA non-coding downstream 783067 32372463 ~ 32372866 (+)
G81115 NA non-coding downstream 878446 32467842 ~ 32468263 (+)
AMCG00010467 NA other upstream 612106 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 1926186 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 3164266 28242989 ~ 28265443 (+)
G80326 NA other upstream 3522880 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 3554778 27869439 ~ 27874931 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 884637 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 2314419 33903815 ~ 33938237 (+)
G81496 NA other downstream 3112042 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 3167123 34756519 ~ 34845876 (+)
G81576 NA other downstream 3422919 35012315 ~ 35012693 (+)

Expression


Co-expression Network