AMCG00010497 (dcp2,LOC107568646,LOC104944318)


Basic Information

Item Value
gene id AMCG00010497
gene name dcp2,LOC107568646,LOC104944318
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32474033 ~ 32530266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010497
ATGTCTGCCTCCACTAAAATGGAAAGATGTGGGCAGCACAACTGGTTCTACTCACCTGTTGGGCTATTTCGGGATGTTCTTATCGTCATCATGGAGACCAAACGAGGGGAGATTCCCAGTGGTGTATTGGACGACCTCTGCAGCCGATTCATCCTGCACATTCCCAGTGAAGAAAGGGATAATGCAATCAGAgcACTGTTAGTGCAGGGTTATCTTGCCAAGTCTGGCTGGGGTTTCCCCAAAGGAAAAGTCAATGAGGAGGAAGCTCCCCATGACTGCGCAGTACGAGAGGTGCTGGAAGAAACTGGTTTTGATATCCGTGATCGTATCTGCAAAGACACCTACATTGAGCAGAAAATAACTGACCAGTTGGCCCGACTGTATATAATCCCTGGGGTTCCAAAGGAGACTAAGTTTAAccccaaaacaagaaaagaaatcAGGAATATTGAATGGTTCCCAATAGAGAAACTTCCATGTCACAGGAATGACATGACTCCTAAATCCAAGCTTGGACTTGCACCCAACAAGTTTTTTATGGCCATTCCTTTTGTACGACCTCTCAGAGAATGGATAGCTAAAAACAAAGGAGAATCTTCAGACAGTGACAATGGTTTCACCTCTAATGGCAGTACTCCCTCCAAGCCTCTGGATAAAGTCCGGTCAAGAGCAAAACCAAACCTAATGGTAATTGATGGATCTCCAGGAGAGGGTTtggtaaaacaaaagcaacaaaagccATTCACCCAATCAAATCAAAACGAGCTGACTGAATTCTTAAAAGTCAaaAGTCAGGGTctgaaaggaaatggaaaaaaacaccaggACTCCCCAAACCTGAAGAAAAGGGCGAATGGAGTCGGCAATCAGCAGGTTAAACATCAGTCAACAATGCAGGTTGTGATCTGTGCAACTCCAATGACGAGCAGCATCTCAATCACAGCGACAGACACCCGTCTGCGTGCAACGGGGAGTcactgCTTTTGATGGTCTTGGGACTCTACCTAGGCCTTTGTATTCGTATGTTTTCCTCGTGGGCAACTTGCCTGCCATAAACTGCTTGTGCCTCCCACCTTACACATGGACACCCTGACCCTAGCAGGGACAGCTGGACAGGTGTTGTTCCTCACCTCATGATTACCTGTTTTCCTGGTCCTCGTCTGGGTTCTACTCGAGCATATCCCACAGTCCTTCACTTCTGTACTGCATTCCCCAAAGCTGACTCTGGGAACCATAAAGTGTCTGCAATCTTATGGACAAGCATAAGTGCATTATGGGAACCAGCTACTGTTTCACGTTGAAACTGTTGGCTCTGATCCATGTGCCATACTGGCAGGAACCAGCTGTAACAAGTTGCAGATTACCATTAATACACCTTTGGAAAACTACATATGGGCTTTAGTTGGCAAATAACCTTTGCAGCAATCCATTACATCTGGATTTCGACTTGTCCCAATACTTTGGTTATTATAGTGCTTTTATGTCATTAGTAAGTCTCTTTTATAATGTCCTCACCCATAGCTTGGATTATATGAATCATCCATGACATGATGTGATACATTTCTTAGTTATTGGCACTTGTCTGGCATATTGGcattctgtgtttaaaaaataaaataaaataaaaaaatgctgattttattaaattgatctACAAGAAACTAAGACTAAAATGTAATGGGAATGGCTTATAATTGTGTTGTAGTAATAACTACCAAGTCAATTATAATTTGGATCAGGTTCTGTTTAGAGACCTATAATCCATGTCtgcagaatataaaatgtactttgggTTAGGTGTAAAATTCAGTCCACATTGAtgtaacctaaaataaaattggtgcACCCACATGCAAGTACTTCATAATGACAGTCAGTCTGCAGATTGATTTGGTTttaccatttaattttttttttttttttttttttttttt
>TU101202
tttttttttttttttttttttttattttttttttttttttttttttttttttaatagctgcATCATTAAGTGGATGTTTCTGGACTATAGAAAACTGCTCTCCAGATCTGGGTTTGCATCACTTACTGTTCCACTCGGTTCAGAATGTCCATTGTTGTGGGGCTgagaataaaactgaaatatttattttcttcctacaATGTTAATGTTGGGGTTGTGACCTTGGGTTTGACACTTTGTGCattatgattttaatgattttagtGCATCCTAGATTTAAATATGACAACTTGCCAAGGCACATGgcaaaggtaaaaaaaaagtcaacttCCAGCCATATTATAGACATGAATGCAGGCTGTAATGTCATTTGGGAGAGTTTGATATCTAAAAGACCTGCCAGACCTTATGTAAGACAAATAGTTTTGGTCCCCAGCAGGGGATAGGACTAGGTGACCCTCCTGCCTAGGCTGGGCTCTTGTGTGAGGACCTGTGAGCCGTTTGCATCGTCTCACCAGCGTGGTCCTGTGATTTGCAATCATGAAAGAACTTGGGTGGTGTTGGTTCACCTCTCTGTGCAACAGTGAAACCTACGGATCGTGTCTGATAAAGCCAGGTGGACACTGCAGCAGACCAGGCTGGCCTTGTGTCTATTGGCAGCTTAGTCTTGTTTGCCACATTATTAGGAAAGATGGGTCAGAAAATATGAGGGTTTCAAATTGCCAGTCCTCCTGGTTCATGATCTGTCATACTTGAGGTGAAGAAGTGGCTTTCAAGTTGCATAATGaagtcaacaaaaaaaaacattgcatttagaAAACATGGCAGGCATAGTGGGCTGTGTATTGGGTTCCGTTTATGCCTTCAAATGAATTCTGATGCATTTCGTTGTCTAATGTTTTTGATGCactaaaatatacttttcacTAATTTCCTCTTATTCTCGTTGGATGCTTttggagtgggggtgggggagaaagTTACTCCAGTcctgctcctctccctcccactAAAGTCcaagtgtttttgttaatgtaattctgtaaaatgtatccaACCTCATTGCAAAGACATTAAGGAGTATACATCTGTTGCTAACTTTTACTATgttatacagtatttatctatttgtacCCTACTTAAAGGTAAATGGTTATCTGGTGTTATTTAAGTAAGGGGATCTTGTTCCCtcctgtttttcaaatgaatacattcaccTAAACATcaggtttacttttttttttttttgggggNNNNNNNNNNNNNNNNNNNcttcaaagaaaatgttcaTTTCAACTATGCATGGGAAATATATGCTCCTATAGATGACCTGCTTTGTGGaacattatttttgattttggtttattttatttcaagacCTGTCTTATGTTCATGTTGTATTCCATATTTGCTTTGAGTATCACGTGAATGTTGTAATATAGGACAAAATAACTAATCCCAAGAAAACCATGCTGTTGACACCATATATAGGTTTTAATGTTGACAAGACCTAAGAGTGGTCATCAAAATGTGAACAAGTGTTTGCTCTAATGTGTATagatccaatccaatccaatgtATTATATTCACCCCTTATCCTAAGTTTTGCTGAAACTGTCACTATGTGCATATTGTTGTAATGTTTGAACTGTGCTGTGAATAGCAGCTGTGCATAGCATTTTCTGTTGCATAATCACCTGatacataatgataatattgGTTCAGTGACGGTAAGACATAGGCTTGTTGTTTCCAGGTAGTGAGGTGAGAACAATCAAACCACACTGTTTAATTGGCTGAAGCATTCAAACCAGGTCAGAATCAATGTTCCTTTAAACACAGATAGCAACTACTTTCAACAAGCAAACAACTAGTGCAGTAATAGTTTGAGAGGTTAAGGAgggtaatgtaaaatattactCTTATGAAGCCCACGGTTTTGTGTTAAaggctttttgtgttttgctttctcAAGGAGGTAGCTGGTTCCTGAATTCTTATTTCTGTGCAGCAATAAACTAAAGGTACATCAAGCATGTTCCATTTATCAAAATCTAACACTTGGATGCAGTCAAAGATAAAGTAAGACTTCCAGGGACTTAAACATTCCTGTTTGTTAATGTGAATTTTGTTAGATATTTAGAAccttttgcattttctgtttgtattgtgAAATTATTCTGAACATAACATGTGCATCTTGTTACCCATGTAGATGCTTATACAGGAAATGGTAGCACAATTAAAAATTTAAACAGATTTCCATCAAATGCTATTATGTGTCCATAAAACAAGATTTTTAAATtggcattttcattattttaagtaagCATGCCAGTAAATAAAATTTGTACAGAtctgaaaaaaatgttgaagAAATGGAAGCAAAAgggttttaattttagtttttcagtattttgtcATGGCTTATGTAAAATTCTTTATTGACTGAATGTGTTTCTAGATCCTAGAATACATAAACTTAAGAATTTATTAGCTCACCAGATTGGTGTTTTCAGATTCTCTGGGTGCTTTAGTGTTAATGCCTTTTTGATATCCAATATAACCATGAAGCACCTATTAATTTACCAAACCCTTTTTCAGTTGGTTTCTTTGAATTCACCAGAACATGGTCTTGCATTCTGGATGGGGGACTAAAACCCTTGAACGTGTCTGGCGTGCACTAGATGTGGTACGAACAATAACAAATTAAGACGCCTTTATTCTATCCATTACTGTTCTGATCATATTGCATGTACTGTACAAGATACAAGATACCTGTTCAGGAAATTGGATTTCCAGAATGATGTCAAATGTTGCTAAAATTGGGAATTCAAAACATTCCAAAATGTTAGTTTTGTTGTGAAAATGTGcataaatacagtgcatccatACAACTGAACAGTTGTCGGTTGGCAATTTGAAAGGTGTCCTTAAAATATCTATGAATAAAGGTATTGATCATACAGTAATAATACGTTAAACTGAGGGTGTCTAAGTTGCGGAAGGGGGGTCATGTGCCTTGATTTCAATGGACCTGGTATTTGTGTTGCTCAGAAATGTACTTGCACAGTATAACCGATGGGAATGGGTGTTCATTAGAGATGATGCTTTAGCTCAGCTTCTTGATTGCAGGTTTTTACGTCcctaatatattaaattgtctCCAGTAAGGTTGGTCTTTCTTCACCGGTGAAaccacaagaaagaaaacaattgttGCTAACTTTAGAGTGGTTCTAAGTTCTCAAATGGTAATATtcacaaattcaaatacattttgtaacttTAAAATGGCATTGTATAGGAAACCTGTTTGATCTGAGCCTTAATAAAAACTGGGGAAATATAAAGGGTGTGGGTGTGGTTTCTGAAAGTCTGCTGTATGTAGGTTTGCCATGgtgtattataaaaat

Function

symbol description
dcp2 Predicted to enable m7G(5')pppN diphosphatase activity. Acts upstream of or within mRNA catabolic process. Predicted to be active in P-body. Orthologous to human DCP2 (decapping mRNA 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010497 False 1934 mRNA 0.42 11 32508815 32526898
TU101202 True 3416 lncRNA 0.36 2 32474033 32530266

Neighbor

gene id symbol gene type direction distance location
AMCG00010493 st8sia4,LOC100135820,LOC107737177 coding upstream 190263 32252441 ~ 32283770 (+)
AMCG00010496 NA coding upstream 300638 32162265 ~ 32173395 (+)
AMCG00010495 NA coding upstream 348029 32109907 ~ 32126004 (+)
AMCG00010485 NA coding upstream 535645 31924922 ~ 31938388 (+)
AMCG00010484 NA coding upstream 552900 31916584 ~ 31921133 (+)
AMCG00010501 LOC108416585 coding downstream 135250 32665516 ~ 32689744 (+)
AMCG00010503 NA coding downstream 275342 32805608 ~ 32823998 (+)
AMCG00010502 kcnn2,LOC100135971,LOC106564970,LOC108435393,LOC108276576 coding downstream 315125 32845391 ~ 32857825 (+)
AMCG00010513 ap3s1 coding downstream 510729 33040995 ~ 33057801 (+)
AMCG00010512 NA coding downstream 547565 33077831 ~ 33091942 (+)
G81115 NA non-coding upstream 5770 32467842 ~ 32468263 (+)
G81103 NA non-coding upstream 101167 32372463 ~ 32372866 (+)
G81089 NA non-coding upstream 165740 32306293 ~ 32308293 (+)
G81029 NA non-coding upstream 551983 31921749 ~ 31922050 (+)
G81026 NA non-coding upstream 701676 31772154 ~ 31772357 (+)
G81149 NA non-coding downstream 46383 32576649 ~ 32674654 (+)
G81215 NA non-coding downstream 437995 32968261 ~ 32968507 (+)
G81226 NA non-coding downstream 496631 33026897 ~ 33027960 (+)
G81279 NA non-coding downstream 780586 33310852 ~ 33315569 (+)
G81372 NA non-coding downstream 1502438 34032704 ~ 34035798 (+)
AMCG00010467 NA other upstream 1656430 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 2970510 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 4208590 28242989 ~ 28265443 (+)
G80326 NA other upstream 4567204 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 4599102 27869439 ~ 27874931 (+)
AMCG00010529 NA other downstream 1373549 33903815 ~ 33938237 (+)
G81496 NA other downstream 2171172 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 2226253 34756519 ~ 34845876 (+)
G81576 NA other downstream 2482049 35012315 ~ 35012693 (+)
AMCG00010562 NA other downstream 2940069 35470335 ~ 35477590 (+)

Expression


Co-expression Network