Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00010518 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 33617022 ~ 33638956 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0032934 | sterol binding | molecular_function |
| id | description |
|---|---|
| K12405 | HSD17B4; (3R)-3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase / enoyl-CoA hydratase 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00010518 | True | 1260 | mRNA | 0.46 | 11 | 33617022 | 33638956 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00010517 | NA | coding | upstream | 8943 | 33601543 ~ 33608079 (+) |
| AMCG00010519 | NA | coding | upstream | 33583 | 33538850 ~ 33583439 (+) |
| AMCG00010511 | NA | coding | upstream | 507312 | 33105932 ~ 33109710 (+) |
| AMCG00010510 | NA | coding | upstream | 513655 | 33101960 ~ 33103367 (+) |
| AMCG00010512 | NA | coding | upstream | 525080 | 33077831 ~ 33091942 (+) |
| AMCG00010520 | hsd17b4 | coding | downstream | 20861 | 33659817 ~ 33670180 (+) |
| AMCG00010524 | NA | coding | downstream | 312006 | 33950962 ~ 33954615 (+) |
| AMCG00010523 | NA | coding | downstream | 336246 | 33975202 ~ 33999854 (+) |
| AMCG00010526 | snx2 | coding | downstream | 400823 | 34039779 ~ 34057802 (+) |
| AMCG00010530 | NA | coding | downstream | 418910 | 34057866 ~ 34083688 (+) |
| G81279 | NA | non-coding | upstream | 301453 | 33310852 ~ 33315569 (+) |
| G81226 | NA | non-coding | upstream | 589062 | 33026897 ~ 33027960 (+) |
| G81215 | NA | non-coding | upstream | 648515 | 32968261 ~ 32968507 (+) |
| G81149 | NA | non-coding | upstream | 942368 | 32576649 ~ 32674654 (+) |
| G81115 | NA | non-coding | upstream | 1148759 | 32467842 ~ 32468263 (+) |
| G81372 | NA | non-coding | downstream | 393748 | 34032704 ~ 34035798 (+) |
| G81383 | NA | non-coding | downstream | 463882 | 34102838 ~ 34104640 (+) |
| G81407 | NA | non-coding | downstream | 557111 | 34196067 ~ 34196426 (+) |
| G81474 | NA | non-coding | downstream | 1041020 | 34679976 ~ 34680716 (+) |
| G81479 | aldh7a1,LOC102786701 | non-coding | downstream | 1045333 | 34684289 ~ 34685762 (+) |
| AMCG00010497 | dcp2,LOC107568646,LOC104944318 | other | upstream | 1086756 | 32474033 ~ 32530266 (+) |
| AMCG00010467 | NA | other | upstream | 2799419 | 30766337 ~ 30817603 (+) |
| AMCG00010431 | NA | other | upstream | 4113499 | 29494563 ~ 29503523 (+) |
| AMCG00010407 | NA | other | upstream | 5351579 | 28242989 ~ 28265443 (+) |
| G80326 | NA | other | upstream | 5710193 | 27906497 ~ 27906829 (+) |
| AMCG00010529 | NA | other | downstream | 264859 | 33903815 ~ 33938237 (+) |
| G81496 | NA | other | downstream | 1062482 | 34701438 ~ 34707394 (+) |
| AMCG00010545 | megf10 | other | downstream | 1117563 | 34756519 ~ 34845876 (+) |
| G81576 | NA | other | downstream | 1373359 | 35012315 ~ 35012693 (+) |
| AMCG00010562 | NA | other | downstream | 1831379 | 35470335 ~ 35477590 (+) |
