AMCG00010520 (hsd17b4)


Basic Information

Item Value
gene id AMCG00010520
gene name hsd17b4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33659817 ~ 33670180 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010520
CTAGACTGAAATCAGGGATCCCACCGCTGTGTGCATGCCTGGAAATGAGTGAATTGAATAggctgtctttttttccccctcataaAAAGGCGGCCTTATACAGACTCAGTGGAGATTGGAATCCCCTGCACATTGATCCCAGTTTTGCAGCCATGGGAGGGTTCAAAAAGCCAATTCTTCATGGTCTTTGTTCCTTTGGGTTTGCTGCGAGAcatgttttaaagcattatGCAAACAATGATGTCTCAAAATTCAAGTCAATTAAGGTGCGGTTTGTGAAGCCGGTGTTTCCTGGGCAGTCGCTTCAAACTGAAATGTGGAAAGAGGGAAACAGGGTCTTCCTTCAGTGTAAGgtgaAAGAAACTGGAGATGTGGTTTTGTCAGGGGCCTACGTGGATCTCAGAGATGTGGATAAAGCACCTGTAATGGAACCTGTGGCCGAGGGGCTCCAGAGCGACCTTGTCTTTGCCGAGATCGGCCGCCGCATTATAGATGTCGGGAAGGACCTGGTGAAAAAAGTAAACGCTGTCTTCCAATGGGAGATCACTAAAGGAGGAAACAGTGTTGCACAGTGGACCATCGATCTGAAGAATGGCACTGGGTCACTGTATAAGGGAGCATCGAAAGTTAAATCTGACGTGACCTTCAGTCTCTCTGATGAAGACTTCATGGAAGTTGTACAGGGAAAACTCAACCCACAAAAGGCGTTTTTTGCCGGAAAGCTGAAGGTGAAAGGTAATATAATGCTCAGCCAAAAACTGGAAGCCATCCTAAAGGACTACGCAAAGCTG

Function

symbol description
hsd17b4 Predicted to enable 17-beta-hydroxysteroid dehydrogenase (NAD+) activity; 3-hydroxyacyl-CoA dehydrogenase activity; and enoyl-CoA hydratase activity. Acts upstream of or within embryonic organ development and neuron development. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in D-bifunctional protein deficiency; Perrault syndrome; and Stiff-Person syndrome. Orthologous to human HSD17B4 (hydroxysteroid 17-beta dehydrogenase 4).

NR:

description
PREDICTED: peroxisomal multifunctional enzyme type 2

GO: NA

KEGG:

id description
K12405 HSD17B4; (3R)-3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase / enoyl-CoA hydratase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010520 True 791 mRNA 0.47 7 33659817 33670180

Neighbor

gene id symbol gene type direction distance location
AMCG00010518 NA coding upstream 20861 33617022 ~ 33638956 (+)
AMCG00010517 NA coding upstream 51738 33601543 ~ 33608079 (+)
AMCG00010519 NA coding upstream 76378 33538850 ~ 33583439 (+)
AMCG00010511 NA coding upstream 550107 33105932 ~ 33109710 (+)
AMCG00010510 NA coding upstream 556450 33101960 ~ 33103367 (+)
AMCG00010524 NA coding downstream 280782 33950962 ~ 33954615 (+)
AMCG00010523 NA coding downstream 305022 33975202 ~ 33999854 (+)
AMCG00010526 snx2 coding downstream 369599 34039779 ~ 34057802 (+)
AMCG00010530 NA coding downstream 387686 34057866 ~ 34083688 (+)
AMCG00010527 NA coding downstream 413714 34083894 ~ 34085059 (+)
G81279 NA non-coding upstream 344248 33310852 ~ 33315569 (+)
G81226 NA non-coding upstream 631857 33026897 ~ 33027960 (+)
G81215 NA non-coding upstream 691310 32968261 ~ 32968507 (+)
G81149 NA non-coding upstream 985163 32576649 ~ 32674654 (+)
G81115 NA non-coding upstream 1191554 32467842 ~ 32468263 (+)
G81372 NA non-coding downstream 362524 34032704 ~ 34035798 (+)
G81383 NA non-coding downstream 432658 34102838 ~ 34104640 (+)
G81407 NA non-coding downstream 525887 34196067 ~ 34196426 (+)
G81474 NA non-coding downstream 1009796 34679976 ~ 34680716 (+)
G81479 aldh7a1,LOC102786701 non-coding downstream 1014109 34684289 ~ 34685762 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 1129551 32474033 ~ 32530266 (+)
AMCG00010467 NA other upstream 2842214 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 4156294 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 5394374 28242989 ~ 28265443 (+)
G80326 NA other upstream 5752988 27906497 ~ 27906829 (+)
AMCG00010529 NA other downstream 233635 33903815 ~ 33938237 (+)
G81496 NA other downstream 1031258 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 1086339 34756519 ~ 34845876 (+)
G81576 NA other downstream 1342135 35012315 ~ 35012693 (+)
AMCG00010562 NA other downstream 1800155 35470335 ~ 35477590 (+)

Expression


Co-expression Network