AMCG00010523


Basic Information

Item Value
gene id AMCG00010523
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33975202 ~ 33999854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010523
GATTGGTGATACCACAGGACCCCTGCTTCACATAATGCTTCTGCGGAGAAATAATGGATACCCCTGAGTACCTGGATTTGGATGAAATTGACTTCACTGATGATTTAGCCTATTCAGTAACATCTCTGAAGACCATCCCGGAGCTTTGCCGAAGATGCGACTCTCAGAACGAAGAAAGACAAGTTCCAGGTACAAACTGGAGCGGTGGCGTTTCGTCCCACAGTGGAAGTGGAATTAAACCCACTGGCATAGCAGAAGTGTACAGCAAATTCAGACCAGTGAAAAGGGTCTCCCCGCTGAAACGCCAGCCCGAAACCACAGACAATGAGACGGACAATGACCAGCCAGAACAAAAAGGAGACTACAGCAAAGAAGAGACCTCTGAAAAGCAGCCTCAGCCTAGCTTGTCTCCCAGTGACAGCCAGGGCTTTAAAGGGAAAGATGCCGGCACTGGGGTGCTGTTTGGAGAGCTGGAGCACTATGACCTGGACATGGACGAGATTCTGGACGTGCCTTACATCAAGTCAAATCAGCAGCTCTCTGCTCTGTCGAAGGGAGCCGCCGAGAAAAGGACTGCGGGTAGCGGCGTGAGCGACAAAGGTCACGGCAACAAGACCTGCTCTGCGGCGAACGGCGAGAACCTGCCAGCGAGCTTGACCCAGTTCTGCGTGCTGTCCCCCGTGAAAAGCTCAGACCTGAGAAAGACGCCGGCTATTGTCGCAGACCAGCACAGACGCCCGGCTGCAGGATTAGAGCTTTCCCAGAATCTGCTTAGCTGTGGCTCAGTTCCCGAAGCTGAGACCCAAGTGAAAAGCTTCCCAAACAGGACGTTTTCGGATTCCCATGCTCATAAGGCCGACAAAGCGATGCCCAACTGCCAGCCCAGGATTTTCCAGCTGCAGAACCTGCCTGCAGATAGCAAGCTGGACGAGAACAGCAACAGGGCCTGGGGCAGCCCGGGGGGACCGGGGGAGCGCAACGAGGAGGCAAAGAAGGTGAAGAGCATCCTCAACATCATCCGAGAAGGGCAGATATCCTTGCTGCCTCATTTAGCCGTGGATAACCTGGAGCAGATCCACGATGAGAATGGAAACAACCTGCTTCATGTCTCGGCCTCCCAGGGCCACGCCGAATGCTTACAGCACCTCACCTCTCTCATGGGGGAGGACTGTCTGAGCGAACGCAACAACGAACAGCTCACTCCTGCCGGCCTCTCCATCAAGAATGGGCGCCTGGAGTGCGTTCGCTGGATGGTGAGTGAAACGGAGGCCATTGCAGAACTCAGTTGCACCAGAGACCACCCCAGCCTGATCCACTATGCTGCATGTTATGGGCAGGAAAAGATTCTCCTGTGGTTATTGCAGTTCATGCAAGAACAAGGGATTTCATTGGATGAAGTTGACCAATACGGAAACAGTGCCGTCCACATTGCATCTCAGCACGGCCATCTGGGCTGCATCCAGACCCTGGTGGAATATGGTGCCAATGTTACCATTAACAACCAGCACGGAGAAAAGCCATCCCAGAGTGCTGAGCGACACGGACACACCACCTGCTCACGCTACCTTGTGGTTGTGGAAACATGCATGTCCCTGGCATCACAAGTTGTCAAGTTAACCAAGCAGCTGAAAGAGCAAACTACTGAAAGAATCACTTTGCAAACTCAACTACAGCAGCTACTGGAAACACAGCAACTGGAAGAGGGCACGCCAGTTGAATCTCCCAGttCACCTTTGTCCCCCGCAGTAACCAGGCCCCAAGTGCCTTTTTCACCAGAACACAAGACAATGGACACTACCCACTCAGCCCTCCAGAGGAGCTGTGCCGGCACTCTGCCTGGCCGCCGGCTCGTCAAGCAGAAGGAGGAAGACTCTGATAAGATTCTGCGACAGCTTCTGGGAAAAGAGATAGCAGAGAACGTGTGTACCCAAGAGAAACTATCACTGGAGTTCCAGGATGGGCAGAGAGAAGGCTCTGGAACGGGCCCCAAGATACTGAAGAGGATGCCAGCCGAGAAGAGAGAGCTTAAACTGGCTAGACTGAGACAGATCATGCAGCGCTCCCTCAGCGAGTCGGACACGGATTCCTATCACTCGGAAGAGCAGAAAAACACTCCGGTCAAGAGAGCTGACAAACCCCGCCCTCTACCTATTGTAGAAAATGTGGAGTGTACTGAGAGTTTACACCTAATGATCAAGAAGCACACTTCCGCGGCTGGACGCAAGTACGCCTTTGCCAACAGTGTTTCAAAGTCCATGGATGGACACAGCCCCTCGCCCACTTCAGAAGGCAGCGACCCGGATTATGAATCGCAGTACCAGGCGGGGATTCTCCCGAGAACTGGAGTGACTGGGGAAGTGCCCCCGTCTGCCTCTGAAAATGCTAATAACCAAAAGGTTACCACAAGCCCCAAAAGTGCCCTCAAATCTCCATCCTCAAAGAGAAGAACATCCCAAAACTTGAAACTCAGGGTGACCTTTGAGGAGCCAGTTGTGCACATCGAACAGACGGAAGGGGAAGCGAATAGTAGCAAAGGAAAAGAGAGCGATAAAGGCGTGTCCAGGACTGCCCAAAGCACGGACTCGGGTGATGCGTGGAAAAGACCGTTTGGAACGTTCAGATCCATCATGGAGTCTCTGAGTGGAAACcagaacaataacaataacaattatcCAACGGCTGCTATAGTCAAAACACCCCCATCTGGTTTACTACTGACTTCGACAGGAAGGaaacaagcagaaacaaaagcacACCAAATTAGCCCCACAAAGTTAAAGAGCAAAACAGATACTTGCATCTTCAGTCGCGATCACCCTTGCATGCTGATTACTGATGACCTTCATAATATGTACACTGCATGcaCTGATGACTTGATCAATTGTCAGGAGGAAAAAACTATGGCCAGTGCAGAAGACCCAGAGTTACTGGAATTCTTCTTGTGAGAGCATCGTCTTCCCAAATTTGTGCGGATGGTCTAATGGCTGCTACAGGTCACTTTGAGCAGCCCTGGATTCAAGGAATAGAAGGGGACGCAGATTTTGAACACTGCTTTTCAAGAGAATACTTCAAGAAGGAAGTCAAAGGAATCGAAGTGTTTGGAGAATATGAAATCCGtttcatactttttatttttctcgtAAACTGACACTTGTTTGctaaagctatttttaaaaacctatgCACTTTCGCAAGCAATTTAACATCATACATGTATTTCTAAATCTTTTTGCAACAACACATCTGATGAAGATATGGCCTTGTAATTCTTTTCTAAAATGAAGTAGTGTTAATTGTAAAGAATGTTATTTTGTGACTTTTTGGGTTTGGGGGGGtgcatgctttttttaaataaaactgaactgtGGATTGCTAGCTCTAGAAGTTCATGATAGCTAAAGAATGCAGAGTCGAGACATGGGATTTGCAGTACTTTGATTACTGTGGTACacaattttgtttaatgtaacatTGTTTATGTGCAgaatttctgtttctgtgtttcactGCTTTGTTTCCTCTGAGTTACAGAGTATCAGAACAATACAACTTTTTTGAGATGACGGCAAAGTCATGAAGGATCTTTTGACTTTTATGTACAATTTGCTGAACTAAAAGTCAAAAGCTCTCCACACTTTCATGGCcgaattgattgattttattttgctgaagtATGCCAATGGCTTTCACACAACTGCAGGctgtatttttgtctttaatattGAAACCTTAACACACTTCAATAAAAATAggggaaaacattttgtattttccttaccatattta

Function

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010523 True 3786 mRNA 0.48 11 33975202 33999854

Neighbor

gene id symbol gene type direction distance location
AMCG00010524 NA coding upstream 20587 33950962 ~ 33954615 (+)
AMCG00010520 hsd17b4 coding upstream 305022 33659817 ~ 33670180 (+)
AMCG00010518 NA coding upstream 336246 33617022 ~ 33638956 (+)
AMCG00010517 NA coding upstream 367123 33601543 ~ 33608079 (+)
AMCG00010519 NA coding upstream 391763 33538850 ~ 33583439 (+)
AMCG00010526 snx2 coding downstream 39925 34039779 ~ 34057802 (+)
AMCG00010530 NA coding downstream 58012 34057866 ~ 34083688 (+)
AMCG00010527 NA coding downstream 84040 34083894 ~ 34085059 (+)
AMCG00010528 NA coding downstream 95297 34095151 ~ 34099552 (+)
AMCG00010522 prdm6,LOC102788536 coding downstream 115282 34115136 ~ 34120020 (+)
G81279 NA non-coding upstream 659633 33310852 ~ 33315569 (+)
G81226 NA non-coding upstream 947242 33026897 ~ 33027960 (+)
G81215 NA non-coding upstream 1006695 32968261 ~ 32968507 (+)
G81149 NA non-coding upstream 1300548 32576649 ~ 32674654 (+)
G81115 NA non-coding upstream 1506939 32467842 ~ 32468263 (+)
G81372 NA non-coding downstream 32850 34032704 ~ 34035798 (+)
G81383 NA non-coding downstream 102984 34102838 ~ 34104640 (+)
G81407 NA non-coding downstream 196213 34196067 ~ 34196426 (+)
G81474 NA non-coding downstream 680122 34679976 ~ 34680716 (+)
G81479 aldh7a1,LOC102786701 non-coding downstream 684435 34684289 ~ 34685762 (+)
AMCG00010529 NA other upstream 36965 33903815 ~ 33938237 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 1444936 32474033 ~ 32530266 (+)
AMCG00010467 NA other upstream 3157599 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 4471679 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 5709759 28242989 ~ 28265443 (+)
G81496 NA other downstream 701584 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 756665 34756519 ~ 34845876 (+)
G81576 NA other downstream 1012461 35012315 ~ 35012693 (+)
AMCG00010562 NA other downstream 1470481 35470335 ~ 35477590 (+)
AMCG00010563 cdc42se2 other downstream 1480946 35480800 ~ 35526224 (+)

Expression


Co-expression Network