AMCG00010529


Basic Information

Item Value
gene id AMCG00010529
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33903815 ~ 33938237 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010529
cCAAAGTCTACAACGTCAGACAGAGCAACTGCACGAATTGCATCACACCCACTaatcagcaaaaaaataatagacaTTAAAgCTGCCATTAAGGCATTCAAAGACGAGCGGAAAAAGTctttaaaaggcaaaaaagCTCCACAGCTGGGAAAGATTGACAAGGACACTTTGAAGCCAACAGATGAACGCAAAGGGGAATGCACCTCTGAGGAAACGGAGAAGAGTACTGATAAACCAGACCCCTTACAACCCCCTCCTGTTGATAAAGAAGAGGTTCAAAATTCAACCAACAAGCCACCCACTCCTGCGAATAAAACAGAGCCTAAAGTGAAATTACAGAAACCAGACCTGGAAGGTGAAGAAAGTGAATTAGATGACTCAGATGATGAAGAGAAGGAATACTTTGATGATAGCACAGAGGAACGTTTTTACAAGCAGTCATCCCAGTCTGAAGATAGTGGAAGTGATGGAGATGACTTTTTTATTGGCAAAgtgaaaaaagtgaagaaaaagaaaaccgaCACTGCCCCTGCACAGGAAAAGAAGAAACCCGATGTCAGGAAAGCAATTGATGATCTCTTAAAAGAAGCAAGATCCACCACCCAGGCCAAGGGAAAAGGCCAGCAGAACCAGAAACAAGTGAGAATGAAGTCCGTCTTCTGCAATACTTTATCAGGATCAAAAGGGACCAAACCCCAGAATCAAAAAAGCTGCTGTGAAAAGCCGACCACAATTTCAGAATCGCCCAGCTCACACCGCCGCCGTCAGGAAGTTTCCCAATCCAACTCCGCACAAACCAGAGACTCTCCATCCCTCCTGGGAGGCCAGCAGGAGACGAAAAGAACAACAGTCCCAAATAACAGCGTTCCAGGGGAAAAGGATCAAATTTGA
>TU101485
TGACGGAAACAACGTGTTTGAACAAACTGAGATACAGTAAAGCATTTaagttttgtaaatgtgtattttaagatcttaaattaaaaagggaGAGTCGAGATGGAACAAGTtctaaatttaaacaatgaGGTGGTGAAGATGAGAAAAGATGTGAAGAAGGCAAAAGCATTGATTATCCGGAAGCTAACGAGGCACATTGCTGAGCTCAAATCCAAAAaAGGCAAAGCAGAAGAAGTTGAGAAGAACCAAAGGCGAGTGGGGAGACTGTTAGAAGAAATACATGAAATGAAGaCTTTAAAACCTGATGAAGTTACAAAGGCGGCCCTGCAAAAGAATCTCAACTTTGAACAAGTCtgtaaaaatcCAAAGTCTACAACGTCAGACAGAGCAACTGCACGAATTGCATCACACCCACTaatcagcaaaaaaataatagacaTTAAAgCTGCCATTAAGGCATTCAAAGACGAGCGGAAAAAGTctttaaaaggcaaaaaagCTCCACAGCTGGGAAAGATTGACAAGGACACTTTGAAGCCAACAGATGAACGCAAAGGGGAATGCACCTCTGAGGAAACGGAGAAGAGTACTGATAAGTGTGCTGAAGTGAGCTGTGATGACATAAATGAAACCAAAGAGATTGTTCCAACAAAAGAGATTGTTCCAACAAAAGAGATTGTTCCAACANNN
>TU101487
GAACACTGATACCAAATCCCTCAGACCAGACCCCTTACAACCCCCTCCTGTTGATAAAGAAGAGGTTCAAAATTCAACCAACAAGCCACCCACTCCTGCGAATAAAACAGAGCCTAAAGTGAAATTACAGAAACCAGACCTGGAAGGTGAAGAAAGTGAATTAGATGACTCAGATGATGAAGAGAAGGAATACTTTGATGATAGCACAGAGGAACGTTTTTACAAGCAGTCATCCCAGTCTGAAGATAGTGGAAGTGATGGAGATGACTTTTTTATTGGCAAAgtgaaaaaagtgaagaaaaagaaaaccgaCACTGCCCCTGCACAGGAAAAGAAGAAACCCGATGTCAGGAAAGCAATTGATGATCTCTTAAAAGAAGCAAGATCCACCACCCAGGCCAAGGGAAAAGGCCAGCAGAACCAGAAACAAGTGAGAATGAAGTCCGTCTTCTGCAATACTTTATCAGGATCAAAAGGGACCAAACCCCAGAATCAAAAAAGAAATTTTCGTGGAAATCCTCAAGAGTACAAGGGCTCAGCTGCTGTGAAAAGCCGACCACAATTTCAGAATCGCCCAGCTCACACCGCCGCCGTCAGGAAGTTTCCCAATCCAACTCCGCACAAACCAGAGACTCTCCATCCCTCCTGGGAGGCCAGCAGGAGACGAAAAGAACAACAGTCCCAAATAACAGCGTTCCAGGGGAAAAGGATCAAATTTGACGACTGATTTTTGATTAATAATGACTTGATAGTTTCACTGCAAAGTGTTTTATACAGGTAAATTTGAGTAGCAGTACCGTTTCTTTTACTGCATCCATTTAGCCGTCAGTTGACAGATGGTCAGTTTTGCTTGCTTATGCTAGGTTTTGAACCACATTGTCATAGTAGAGCATTTATAAATTGTTCCAGTTTTTTcctgtacagtttatttataaactgCTCCTTAACAAAACTGATGGATGTAATATTTCTTCTGTGTATGtaagatttaatttgttaatattaagCTATACAATA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010529 False 891 mRNA 0.44 4 33934595 33937940
TU101485 False 690 TUCP 0.39 6 33903815 33935416
TU101487 True 1017 lncRNA 0.41 3 33936414 33938237

Neighbor

gene id symbol gene type direction distance location
AMCG00010520 hsd17b4 coding upstream 233635 33659817 ~ 33670180 (+)
AMCG00010518 NA coding upstream 264859 33617022 ~ 33638956 (+)
AMCG00010517 NA coding upstream 295736 33601543 ~ 33608079 (+)
AMCG00010519 NA coding upstream 320376 33538850 ~ 33583439 (+)
AMCG00010511 NA coding upstream 794105 33105932 ~ 33109710 (+)
AMCG00010524 NA coding downstream 12725 33950962 ~ 33954615 (+)
AMCG00010523 NA coding downstream 36965 33975202 ~ 33999854 (+)
AMCG00010526 snx2 coding downstream 101542 34039779 ~ 34057802 (+)
AMCG00010530 NA coding downstream 119629 34057866 ~ 34083688 (+)
AMCG00010527 NA coding downstream 145657 34083894 ~ 34085059 (+)
G81279 NA non-coding upstream 588246 33310852 ~ 33315569 (+)
G81226 NA non-coding upstream 875855 33026897 ~ 33027960 (+)
G81215 NA non-coding upstream 935308 32968261 ~ 32968507 (+)
G81149 NA non-coding upstream 1229161 32576649 ~ 32674654 (+)
G81115 NA non-coding upstream 1435552 32467842 ~ 32468263 (+)
G81372 NA non-coding downstream 94467 34032704 ~ 34035798 (+)
G81383 NA non-coding downstream 164601 34102838 ~ 34104640 (+)
G81407 NA non-coding downstream 257830 34196067 ~ 34196426 (+)
G81474 NA non-coding downstream 741739 34679976 ~ 34680716 (+)
G81479 aldh7a1,LOC102786701 non-coding downstream 746052 34684289 ~ 34685762 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 1373549 32474033 ~ 32530266 (+)
AMCG00010467 NA other upstream 3086212 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 4400292 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 5638372 28242989 ~ 28265443 (+)
G80326 NA other upstream 5996986 27906497 ~ 27906829 (+)
G81496 NA other downstream 763201 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 818282 34756519 ~ 34845876 (+)
G81576 NA other downstream 1074078 35012315 ~ 35012693 (+)
AMCG00010562 NA other downstream 1532098 35470335 ~ 35477590 (+)
AMCG00010563 cdc42se2 other downstream 1542563 35480800 ~ 35526224 (+)

Expression


Co-expression Network