AMCG00010551 (isoc1)


Basic Information

Item Value
gene id AMCG00010551
gene name isoc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35142566 ~ 35149632 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010551
ccccTAATGATGGTATGTTTGGTTTTCTATTCTAATAGAAACATGCAAAATCTCCAATTACAGCATTTGCTATTTCGTGTTTGTGTGTagcatttgtgtatgtgtgtctctgtgtactGGACAGCAGCTCATATACCCATAAGTTGATAATGATAAGtagtacatttttcaaaaaatagAATTACAGTACCTCTTTCAACAACAGTATCCTACACCTGAAAATAATCAATGTAATCATAATCTTAAATCTTTAATCTGTATCTGTGTAAACTTctattagacacacacacacatacacaattaatTGAAACCAGGTACCTATGGGAAAAAATATAACAGCAGGTGGTGTGTAGCGATGAtataaattttaattttatgggCCACATCTGATTTAAGTCTGGAATAAGTATTTAATCCCACAAAACCGGCACAATTACAGCACAATATCACAATCTCCCTGGGCTTTATTTCAGAGATTGTGTTCTCTGGGCTTTTCTCTGCTGAAGGGTATCTGAATGCAGCATAATTCTCAAATGGAAAAAGCTGGTTTCGTGAAATATGGACGTTAACCATATATCATAATTCTGCATGCTATGCATATTCCTGTTATTTGTGCCTTTTATCTTCTACATATGCAAGCCACGGAGaaggtaatacaaataaaataatttgaataaaagatGGAGGCTTGCAGTGTATAGATCTGGGACATAACTGAtcatttatagaaaatatacattcatgtgAAGGGTAACATTCCTATAAAGTAAAGTCACAGCTGCAAAAGATAGattaatgtgttttcagtttagACTTGGAcatgattttgatttaatttttaaactgcCTCCATAAAACATTGAGATACAGATTTCAAGAAAATGTGAAGGttgaattaaagaaaatgtctattaaatTATGGAAAGCAGAACATTCAGTGACAATCTGCAATATTCATTAAGCAATTCACACTGAAATAGAAGATGGTGCAAGGggacaaatgtgaaaaacagacaaaacacgagctttaaagaaaataataattaaaaaaacatgggcCTGTGAAAGATAATTATGTTCTATTAAATATGGCAAACCACTAACAATTTAACATACACTGAAAGGAaagtttcttattttaaaatactaaacttTAAACACCAGGCAGAGATCCTTGCTGTCCAAAGCAATCTAGTGAGCATGTGAAATCCATTTTTGATACACATCCAAAAATCCCCccttatttataatatttgaaaatgttccttCAAATAATTAGGTTATGTACGATGGACTTATTTGGCTATAAAAACAAGTGTCGTTAGTCACTTAAAAAGGGCGATATAGATGCAGAAGCAATAGTGTGATTTTGCGGCAGCTGAGGGGCTCTGCGCAGGACTGTGACGTTGCAGCAGACACCGTTTCTCTGAAAGGCGTGACTGTAgcaggtcaggggtcagggttCAGAGGTCAGGAGGAGCAGCCCGCCGTGTCTCCGCCTCCCCGTCGGCACTCCGAGCATCATGGCGGACGCGCAGCAGGGCAGCGCCAGCCACGTCCCGATCCTGCTCTCCTTCTCCGTCTTCTCCCGGCCCTCCTCGGTTCCGCTGGGATCGGGCTACGAGGTGCTGATCCAGAAGTTTCTGTCGATCTACGGGGATCAGATCGACGTGCATCGGAAGTTTGTGATCCAGTTATTTTCAGACGAATGGGGGCAATACATCGATCTGCCCAAGGGCTTTGTAATCGCCGATAAATGCAAACTGCGACTGGTGCCCCTGCAGATGGAGATCACATCTCTGGGGAACCTCACTCCAGCAAGCACGGTTTTCTTTTGCTGTGATATGCAAGAAAGGTTCAGACCTGCCATCAAGTACTTCGGGGATATAATAAGTGTTGGCCAAAGACTGCTTCAAGGTGCCCGCATCTTGGGGATTCCTGTCATAGTTTCGGAACAATATCCCAAAGGCCTGGGAAGCACAGTGCCAGAGATGGACCTCACAGGGGTGAAACTGGTGTTTCCTAAAACCAAGTTTTCGATGGTTCTACCCGAAGTGGAAGCAGCCCTTGCAGAAATCCCAGGACTTCGCAGCGTGGTCCTGTTTGGAGTTGAAACCCACGTGTGCATTCAGCAGACTGCTCTGGACTTGATTGGCAGAGGTTTAGAAGTTCATATCGTGGCTGATTCGACCTCCTCCAGGAGCATGATGGACCGAATGTTCGCCCTCGAGCGTCTGTCTCGAACTGGTATTATAGTGACTACCAGTGAATCTGTGCTGCTACAGCTGGTTTCTGATAAAGACCACCCAAAATTCAAAGAGATTCAAAATATCATCAAGGCCAGCGCTCCAGAGTCTGGGCTGCTTTCGAAGGTCTAACTGCATATCGACGGGTGAAAAGAAACTGGTATTACTGTTAAGTTGTTTACAAAGTGTGGGggaaaaacactaaaactaTAGGCAAGTAGAGGCTTCAAATGCAGATACAAAACATACTGTAGAAATGTGTCGTGTGTTTAGGAAAAGTTCTGGTAACGCCAGTGTGTTTTGTGAAATCACATCAGTGTTGCTACAATCCAGCCTCCAGTACTGTTGAGTTTAAGTGTCGTGAAATATTTTAAGAGGTGCCTAAATATTCACAGTCCAAAATGATTGTAAAACAGCTCTTGAAGGTACGTTTTCTGTGGTGTAATATAGTGCACTTTGTAAACACTGTAATGTAAATCTTTTTTGTATCAGCaggctaaaataaatgttaatgggctggtttcacagacccaaataaGCACTAGTCCTGGCCTACCCAGTTTTATTTTAGGTAGGGTAGACCTAGACTAGGGCTAGTATGTGAAACCAGCCATGTACGTACTTTTTGTGTGTTCTGAAACCACATTTTTGCTTTCTGTTCATGTGGTTTTCAAATCTATAGTGTGTAGGATGTTAACCAAATAAGGGTTGGTTTAAGAAGTCATCCACCTTTTCCTATGACATAAGTCCATTCTTAATTTCTCTTggtaacatttaataatattaaatgattcagtccacaattaataatattaccGAAGACATATCCTGGAATATTGAAAATACAAGATTGTACCTAAAAACTACACCTTTAaaacctttacaaaaaaaaaaaagggaaatgtctGTACACGTTACAGACAGTTATaatagttttttaatatatatttttggtatgGGAAAATGCCAAGCTCATTTGTCAAAAGACTTTCCaacatattaatgtattgtaaaaataaataaatctatatttcaTTCGAAATGTTAATCTATGTGTATAtctttatttctaaaataattataggtttcattgcttaattgtttttaactgGTTTGTAGAACATAAGCTTCCTGATTGGCTATCAATGATTGCACCTGGACTGATATTAACCTACAAACTACTTTACAATAATACTAATCcaataatatatcatgcaaaaagtcacatgcagacaaagtatcttCTGATGCAGGTACTTTCAATTCTAGTTATATTCTGATACTTCTTCAACAGGTTTTGCATTAGGGATAAGAAACTTTGTACAGTGATTTTGCCTCGTATAAACAATAGGTTGCTCATGTTTTTGTTCCAGATAtcatcatttataataattataaatatattgaatgaaaacacattaGCAAAGTGGAACTATCCCATATTGCTGCTTTCTCTAATACTGCATACCTAGAGACCCTACTACTGCTAACCTACTGTAAGGTAACTCTTCCTTTGCTGCAACAGGTAAGCACCTTGATCGCAGTTTTATAAATGAGTTTCCAAAGATGCAGGAACCTGTTGTGTATCAGTGTACGTGTGAGGTGAAAAGATTTCAGTCCCATCTATAATGGAATTCTAAGTAATCTCAGGAGGGTAGGAAAAGCCAAGTCAAATACTGTTCTTGGAAACTGTTGTCAATGGTTGTCTGGCCGTGTGCAGTGTATTTCCTGTGATGTATGACCCTTCTGTAATCTAACAAATAACCTCTTCCTTgtattgtgaaattaaaataatatatgtttagCAACGTACGCTACAAGGCAATATCTACCAGTAGTTCACGTTAGTTTCGGTTCTAGAGAATCCAGGATCAGCTTTCTCAATGTAATTCAGAGTaaggaaaaacacattgcattGACATCTTGTTGCTTAGGAATAAATGCAGTCTAATAAGACACATATTTTTGCTGTGCCCTAATATCATGTGTTCTAAATGGCATAAAATCTCTCAAGGATAATTGGTTTCAGAATTGATGACCGTCACTACCTCCTGATTTCCCTGAAACTGGTATCTTAACTGTGATTGAGCATCATTGTCTCTTCTAATACACAGGGAGATTGGGCAGTGACGTAGAAACTGTTGGAAGCAGCTTTTATTGGAAATAAACCTtgaaaaagtg

Function

symbol description
isoc1 Predicted to be active in cytoplasm. Orthologous to human ISOC1 (isochorismatase domain containing 1).

NR:

description
isochorismatase domain-containing protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010551 True 4427 mRNA 0.38 5 35142566 35149632

Neighbor

gene id symbol gene type direction distance location
AMCG00010552 NA coding upstream 3436 35121614 ~ 35139130 (+)
AMCG00010553 NA coding upstream 35511 35100115 ~ 35107055 (+)
AMCG00010548 NA coding upstream 138678 34962348 ~ 35003888 (+)
AMCG00010550 NA coding upstream 211411 34930547 ~ 34931155 (+)
AMCG00010547 NA coding upstream 238204 34903503 ~ 34904362 (+)
AMCG00010557 NA coding downstream 33299 35182931 ~ 35183883 (+)
AMCG00010555 NA coding downstream 39751 35189383 ~ 35193509 (+)
AMCG00010556 adamts19 coding downstream 66586 35216218 ~ 35250157 (+)
AMCG00010559 NA coding downstream 101204 35250836 ~ 35257291 (+)
AMCG00010558 chsy3,LOC104965884 coding downstream 112335 35261967 ~ 35265386 (+)
G81586 NA non-coding upstream 39982 35102352 ~ 35102584 (+)
G81583 NA non-coding upstream 91954 35050405 ~ 35050612 (+)
G81582 NA non-coding upstream 103099 35039257 ~ 35039467 (+)
G81581 LOC108412713 non-coding upstream 125434 35016909 ~ 35017132 (+)
G81580 NA non-coding upstream 126232 35016075 ~ 35016334 (+)
G81675 NA non-coding downstream 512531 35662163 ~ 35666680 (+)
G81707 NA non-coding downstream 553057 35702689 ~ 35704527 (+)
G81710 NA non-coding downstream 557885 35707517 ~ 35713953 (+)
G81812 NA non-coding downstream 995206 36144838 ~ 36145081 (+)
G81814 NA non-coding downstream 997911 36147543 ~ 36148008 (+)
G81576 NA other upstream 129873 35012315 ~ 35012693 (+)
AMCG00010545 megf10 other upstream 296690 34756519 ~ 34845876 (+)
G81496 NA other upstream 435172 34701438 ~ 34707394 (+)
AMCG00010529 NA other upstream 1204329 33903815 ~ 33938237 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 2612300 32474033 ~ 32530266 (+)
AMCG00010562 NA other downstream 320703 35470335 ~ 35477590 (+)
AMCG00010563 cdc42se2 other downstream 331168 35480800 ~ 35526224 (+)
AMCG00010578 NA other downstream 927481 36077113 ~ 36079892 (+)
AMCG00010585 NA other downstream 941907 36091539 ~ 36094497 (+)
G81971 NA other downstream 2080796 37230428 ~ 37251169 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002010 isoc1 coding NC_007121.7 CM002894.2 16547259 ~ 16563953 (+)