AMCG00010558 (chsy3,LOC104965884)


Basic Information

Item Value
gene id AMCG00010558
gene name chsy3,LOC104965884
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35261967 ~ 35265386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010558
ATGGCCGTGAGGTCCCGGAGACCCTGGGTGAGTGTGATCCTGGGGCTGATCCTGGGCTTCACCGCGGCTTCGTGGCTCATTGTGCCCCGGGTGGTGGACCTCAGTGGCAAGAAGAGAAAATCCACCATCTGCTCCTACTACAGCAACGCCGCGGCTGGCGTGGGCAAGGCGCTGGCATCGGAGAGCCTCGGCAGCAGCGCCAGCAGCCATGCGTGGCACCGGGACGGGGGGAGCCCTGCTGCCAGCCGGGAGGAcagcgaggaagaggaggagagccGGTACAGGACTAGCAACGGCAGCGGGGACGGGGGGGGACCCATCCGGCGGCCGCGGCATTTTCTCTACGTGGGTGTCATGACCGCCAAGAAGTACCTGGACTCCCGAGCCGTGGCCGCACACCGGACCTGGACGCGCTCCATCCCCGGGCAGGTGGAGTTCTACTCCAGCGAGGGCTCCGACCTGGTGCCCGTGTCCTCCCCCATCCCCGTGGTGTCGCTGGCCGGGGTCGACGACTCCTATCCCCCCCAGAAGAAGTCCTTCATGATGCTGAAGTACATGCACGACCACTACTTGGATAAATACGAGTGGTTTATGAGGGCAGATGATGACGTCTACATACGAGGCGAGAAGCTGGAGGGCTTCCTCAGATCTCTGAACAGCAGCAAGCCCCTGTATTTGGGCCAGACTGGACTGGGCACCACTGAGGAACTGGGCAAGCTGGCTCTGGAGCCGGGCGAGAACTTCTGCATGGGGGGGCCCGGCATGATCTTCAGCAGGGAGGTGCTGCGCAGGATGGTGCCGCACATCGGACAGTGTCTGCGGGAGATGTACACCACGCATGAGGACGTGGAGGTGGGCCGCTGCGTGCGGAGGTTCGGAGGGACCCAGTGCGTCTGGTCTTATGAG

Function

symbol description
chsy3 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranial cartilage; inner ear; lateral mesoderm; notochord; and tail bud. Orthologous to human CHSY3 (chondroitin sulfate synthase 3).

NR:

description
PREDICTED: chondroitin sulfate synthase 3

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010558 True 906 mRNA 0.64 2 35261967 35265386

Neighbor

gene id symbol gene type direction distance location
AMCG00010559 NA coding upstream 4676 35250836 ~ 35257291 (+)
AMCG00010556 adamts19 coding upstream 11810 35216218 ~ 35250157 (+)
AMCG00010555 NA coding upstream 68458 35189383 ~ 35193509 (+)
AMCG00010557 NA coding upstream 78084 35182931 ~ 35183883 (+)
AMCG00010551 isoc1 coding upstream 112335 35142566 ~ 35149632 (+)
AMCG00010560 chsy3,LOC107573232,LOC107665461 coding downstream 98324 35363710 ~ 35365281 (+)
AMCG00010564 sptlc1 coding downstream 278663 35544049 ~ 35554999 (+)
AMCG00010566 ror2,LOC102784735,LOC107720387 coding downstream 338752 35604138 ~ 35612541 (+)
AMCG00010570 NA coding downstream 435275 35700661 ~ 35701496 (+)
AMCG00010569 auh,LOC107720385 coding downstream 453849 35719235 ~ 35731357 (+)
G81586 NA non-coding upstream 159383 35102352 ~ 35102584 (+)
G81583 NA non-coding upstream 211355 35050405 ~ 35050612 (+)
G81582 NA non-coding upstream 222500 35039257 ~ 35039467 (+)
G81581 LOC108412713 non-coding upstream 244835 35016909 ~ 35017132 (+)
G81580 NA non-coding upstream 245633 35016075 ~ 35016334 (+)
G81675 NA non-coding downstream 396777 35662163 ~ 35666680 (+)
G81707 NA non-coding downstream 437303 35702689 ~ 35704527 (+)
G81710 NA non-coding downstream 442131 35707517 ~ 35713953 (+)
G81812 NA non-coding downstream 879452 36144838 ~ 36145081 (+)
G81814 NA non-coding downstream 882157 36147543 ~ 36148008 (+)
G81576 NA other upstream 249274 35012315 ~ 35012693 (+)
AMCG00010545 megf10 other upstream 416091 34756519 ~ 34845876 (+)
G81496 NA other upstream 554573 34701438 ~ 34707394 (+)
AMCG00010529 NA other upstream 1323730 33903815 ~ 33938237 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 2731701 32474033 ~ 32530266 (+)
AMCG00010562 NA other downstream 204949 35470335 ~ 35477590 (+)
AMCG00010563 cdc42se2 other downstream 215414 35480800 ~ 35526224 (+)
AMCG00010578 NA other downstream 811727 36077113 ~ 36079892 (+)
AMCG00010585 NA other downstream 826153 36091539 ~ 36094497 (+)
G81971 NA other downstream 1965042 37230428 ~ 37251169 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002013 chsy3 coding NC_007121.7 CM002894.2 16592851 ~ 16748593 (+)