AMCG00010562


Basic Information

Item Value
gene id AMCG00010562
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35470335 ~ 35477590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010562
TGAATTACCTGCAGAAAATTCAACATGGAATCGCGCATGAAGGTTCTGCGGCTGTTCAAGACACTGCACAGGGCAAGACTGGATGTCTTCAAAGACGACACCAGCACCTTAGCAGCTGCCAGACAAAAGATAAACGAAGAATTCAAGAAGAACAGAAATGAGACTTCTGTGGAAAACATCAATCAGatgaTTAAAATGGGTTCAGATGTGGAAACCATACTTCGCAAAACTGTAATCCAGGGAGTTCATACGGCAGACAACAGGATAACTCTTCGTGCCAGAGAGGAGCTCCTGTTGGACAATGTACCTTATTGTGATAACCCCAGGAAGAAGGAGGCATAAATCCAAACTTTGTGTTTTAAGACACTTTATGATGGTTTCCATATTCAAGTGGCATCAaccttcattttctgtttttaaacagtCCGTTATGATATTGACtggtcagcatggtgatgttgCTCTCCATCGCTGAAGAGAAGGAGTGAACGCTGTCCCTGTGGACCGAACAAGGAGCTCCTTTCTTTGGATATAAATGATTGAGGCACCGTGCATATTCATTATGACATGTATATAAGTGAATATCCTGtgtaaaatgtactatttaTCCATtcagatggtgtttttttttaaatctaagtaAATGTCTCTCCTaatgatgtatttataaatgtcttattaatgaaaacattgatgTGTTTCCATTAGTCCTGCATATACAgcttactgtatatattcataaacatcatatacatacattcaaattatatattttttggttctCTAAGTTCACAAAGCTAGATGGTCTTCTGAACATATTGTAAAACCCACTGGATCCATCTGATGGATACATTTTGAAGATCAGTATATTTCTAACGCTGGATGAACGCTAGATGGCAGTGTTGACAAGGATGTCAAAATAACATAAATGGCAATATGGAAGGAGATCATATGTATGCAACACCACACTAAGTTCAAGTTGTAAAATGTAGCAGTATCTGTGGGCTGAGTGTTATAATTTTCGAAGGCTGTTATTAATACTGCACCACAGGCACAAGGTTGATGGGCCGAAATGAATGCTGCTCCACTGTATTGGACTGATCAGTTTAATTTGACAGAGCTCTATAAATTGAATGTCAAGATTTTGGCCacaagtcatttaaaaatgtgaaaagggttgttttgttttaaaacatggcactgtttgtttttgtagtgtaTAACTATGTGCAATCTTTTAACTTACAGTTAAAAGATTGGTCATagttataaaatataacaacttactttaaataaatgatgtgatgcagatttgaatgtttaaCTTTATAACAATCCCTCTCCCAAGGGACTCCTTGTCTTCAATAGTGCATAGTTGTGGGATTTTGGAAACATGTTTTAACGGTGTGAAAGCTTGTCTAAGTCAATGAGCTCTGTGAAAAAGaattttgttaaagaaaatcTTAACAGGCTTTATAAAGATGTAAGAGTCAGCACCATATGCATTCAATTAACTGCAGCAACTGATTATCTCCCTTCAGTTCCTTTAATATAGTTTCTGTAGATATCTAGTTTGAGTCATCTTCCAGACATGCTGTTTTGATCCGTTGCCACGTACTGCAGGGTTACTGTCAAAGCCTCTAATCTTCATTGTTGGTGTGTCTCTGATGcaattactgtataataaaaaaataagtcaaaaatatacattaaaaaatgactgatacatatatttttgaaatgtttataatcagaaaaaatatataatttgggtTGTTTCAGTACAATGCaaacatgtcattaacaaaCTAAATGTTACAAACTTGCTTTtgc
>TU101832
cttgCTTCACGCAGAATAGTGGTTGAAAGGTCTTTATTTGTCGTAGTTTCTTCCAGTGAAAAGTCACAAATGATTAACACAGCTggcattaaacattaacaaaagaatttactgtttttttttttcctccttctggGAAGTTTTTCAGCCAGGTTAACCAGGAGGCCAACCCAGCTGACGGCCTCCAACAACATGGATGTGAATGTGGTACACAGTCTGCCCCCCGTCGGGCCCCTCATTCACAACCAGCCGGTAGCCATTGGGAAGGCCCACATCTGCCGCGCACTTCTTTGCCACGATCATCAGGTGTCCAAGAAGCTGGAAACACAGAGGAAGAGGCGGGGAAAGCAGTGGCGTGAATTACCTGCAGAAAATTCAACATGGAATCGCGCATGAAGGTTCTGCGGCTGTTCAAGACACTGCACAGGGCAAGACTGGATGTCTTCAAAGACGACACCAGCACCTTAGCAGCTGCCAGACAAAAGATAAACGAAGAATTCAAGAAGAACAGAAATGAGACTTCTGTGGAAAACATCAATCAGatgaTTAAAATGGGTTCAGATGTGGAAACCATACTTCGCAAAACTGTAATCCAGGGAGTTCATACGGCAGACAACAGGATAACTCTTCGTGCCAGAGAGGAGCTCCTGTTGGACAATGTACCTTATTGTGATAACCCCAGGAAGAAGGAGGCATAAATCCAAACTTTGTGTTTTAAGACACTTTATGATGGTTTCCATATTCAAGTGGCATCAaccttcattttctgtttttaaacagtCCGTTATGATATTGACtggtcagcatggtgatgttgCTCTCCATCGCTGAAGAGAAGGAGTGAACGCTGTCCCTGTGGACCGAACAAGGAGCTCCTTTCTTTGGATATAAATGATTGAGGCACCGTGCATATTCATTATGACATGTATATAAGTGAATATCCTGtgtaaaatgtactatttaTCCATtcagatggtgtttttttttaaatctaagtaAATGTCTCTCCTaatgatgtatttataaatgtcttattaatgaaaacattgatgTGTTTCCATTAGTCCTGCATATACAgcttactgtatatattcataaacatcatatacatacattcaaattatatattttttggttctCTAAGTTCACAAAGCTAGATGGTCTTCTGAACATATTGTAAAACCCACTGGATCCATCTGATGGATACATTTTGAAGATCAGTATATTTCTAACGCTGGATGAACGCTAGATGGCAGTGTTGACAAGGATGTCAAAATAACATAAATGGCAATATGGAAGGAGATCATATGTATGCAACACCACACTAAGTTCAAGTTGTAAAATGTAGCAGTATCTGTGGGCTGAGTGTTATAATTTTCGAAGGCTGTTATTAATACTGCACCACAGGCACAAGGTTGATGGGCCGAAATGAATGCTGCTCCACTGTATTGGACTGATCAGTTTAATTTGACAGAGCTCTATAAATTGAATGTCAAGATTTTGGCCacaagtcatttaaaaatgtgaaaagggttgttttgttttaaaacatggcactgtttgtttttgtagtgtaTAACTATGTGCAATCTTTTAACTTACAGTTAAAAGATTGGTCATagttataaaatataacaacttactttaaataaatgatgtgatgcagatttgaatgtttaaCTTTATAACAATCCCTCTCCCAAGGGACTCCTTGTCTTCAATAGTGCATAGTTGTGGGATTTTGGAAACATGTTTTAACGGTGTGAAAGCTTGTCTAAGTCAATGAGCTCTGTGAAAAAGaattttgttaaagaaaatcTTAACAGGCTTTATAAAGATGTAAGAGTCAGCACCATATGCATTCAATTAACTGCAGCAACTGATTATCTCCCTTCAGTTCCTTTAATATAGTTTCTGTAGATATCTAGTTTGAGTCATCTTCCAGACATGCTGTTTTGATCCGTTGCCACGTACTGCAGGGTTACTGTCAAAGCCTCTAATCTTCATTGTTGGTGTGTCTCTGATGcaattactgtataataaaaaaataagtcaaaaatatacattaaaaaatgactgatacatatatttttgaaatgtttataatcagaaaaaatatataatttgggtTGTTTCAGTACAATGCaaacatgtcattaacaaaCTAAATGTTACAAACTTGC

Function

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010562 False 1833 mRNA 0.35 5 35474654 35477590
TU101832 True 2183 TUCP 0.38 6 35470335 35477584

Neighbor

gene id symbol gene type direction distance location
AMCG00010560 chsy3,LOC107573232,LOC107665461 coding upstream 105054 35363710 ~ 35365281 (+)
AMCG00010558 chsy3,LOC104965884 coding upstream 204949 35261967 ~ 35265386 (+)
AMCG00010559 NA coding upstream 213044 35250836 ~ 35257291 (+)
AMCG00010556 adamts19 coding upstream 220178 35216218 ~ 35250157 (+)
AMCG00010555 NA coding upstream 276826 35189383 ~ 35193509 (+)
AMCG00010564 sptlc1 coding downstream 66459 35544049 ~ 35554999 (+)
AMCG00010566 ror2,LOC102784735,LOC107720387 coding downstream 126548 35604138 ~ 35612541 (+)
AMCG00010570 NA coding downstream 223071 35700661 ~ 35701496 (+)
AMCG00010569 auh,LOC107720385 coding downstream 241645 35719235 ~ 35731357 (+)
AMCG00010568 auh coding downstream 268947 35746537 ~ 35751114 (+)
G81586 NA non-coding upstream 367751 35102352 ~ 35102584 (+)
G81583 NA non-coding upstream 419723 35050405 ~ 35050612 (+)
G81582 NA non-coding upstream 430868 35039257 ~ 35039467 (+)
G81581 LOC108412713 non-coding upstream 453203 35016909 ~ 35017132 (+)
G81580 NA non-coding upstream 454001 35016075 ~ 35016334 (+)
G81675 NA non-coding downstream 184573 35662163 ~ 35666680 (+)
G81707 NA non-coding downstream 225099 35702689 ~ 35704527 (+)
G81710 NA non-coding downstream 229927 35707517 ~ 35713953 (+)
G81812 NA non-coding downstream 667248 36144838 ~ 36145081 (+)
G81814 NA non-coding downstream 669953 36147543 ~ 36148008 (+)
G81576 NA other upstream 457642 35012315 ~ 35012693 (+)
AMCG00010545 megf10 other upstream 624459 34756519 ~ 34845876 (+)
G81496 NA other upstream 762941 34701438 ~ 34707394 (+)
AMCG00010529 NA other upstream 1532098 33903815 ~ 33938237 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 2940069 32474033 ~ 32530266 (+)
AMCG00010563 cdc42se2 other downstream 3210 35480800 ~ 35526224 (+)
AMCG00010578 NA other downstream 599523 36077113 ~ 36079892 (+)
AMCG00010585 NA other downstream 613949 36091539 ~ 36094497 (+)
G81971 NA other downstream 1752838 37230428 ~ 37251169 (+)
G81987 NA other downstream 1783734 37261324 ~ 37264049 (+)

Expression


Co-expression Network