AMCG00010563 (cdc42se2)


Basic Information

Item Value
gene id AMCG00010563
gene name cdc42se2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35480800 ~ 35526224 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010563
atgattaGGTGCTGGCTGGATCAAAAACTTGGACTGCTGCAGATCCCCATGGACAGGAATGAGAAGCGACGAAGGCGGATCGATCGGAGTATGATTGGAGAGCCAACAAACTTCGTCCACACGGCCCACGTAGGGTCAGGGGACCTGTTCAGTGGCATGAACTCAGTGAACTCAATTCAGAACCAAATGCAGTCTAAGGGAGGATACGGAGGAGGTGCCATACCAGTAAACGTGCAAATGCAGCTTGTGGACACAAAAGCAGGATAACttctatatacatttgtttgGTTCCTATGAGTATGTGTTTCCTCCTCCTCGCCTCCCTTATTGCCTTTGTTGACTGCTTTTCGTGTTTCTCATGAGACGGAAGTGAGGGTTCGTCCTTCAACATTCATCCCTGTGACTGTTGTTCTACGCAAAAAGATAAAGACAGTTTGGCATTCTGTTGCAATGAAGCTGCCATGCCTTTCAGAAGCTCCCACGGGGGCTCGGCCAAAGAGACATGGACTGATTGCTTCCctctccacccccaccccccctaaACCTAAATGGGATGTTAGcatgatggattttttttttttctgcaagtgCCAGTGCAACATGTAACATTGCTCTTCTGTGTAATTTGCTGTGAGCGGTCGTGctcattttttggtttgtttattttccgttctgttttcggttttgtttatttttggagtTGTAAATGTCAATGTTTGAAGGTCTGGAACCTACAAGcacaaaaccttttttaataCGATTTTATTAAGTTTTGTTCCTTCTTTGCTGTCCTGTTTGGCTGTCAGCGTCGTAGTATACTGAGTGTTTGTGAAGTGGCTTTGTACGGTGGCCTTTCAGTGCCAAAACGCACGTAGCTGCAGAATGATACTGTTgctgacaagaaaataaaatctggcaAAAGTTAATACCATTCCATAGGAAACAGAATTGTTACTTAGCTGCTTAAAATTGGTTTTatgctctttttttattttttattataatttctaaaCTGGCATTTCAAATGGCAATATGCTGTAAATGTGCAGTATACTTGAGTTAAAGAAGCCGGAGTTTCAGTGTGTAACCCGTGTAGTTACATGTGTATAATGTAGTGATGTTGTAGTGATCAGTGCTGGTGTGGCAACAATATTTATATCAAATTGATTATCTGACTGAGATGCAAATCTAAACTTAGTCTTATGGAGTAACAGCCTAGTCTGTTGCCTGCATTTAGTAActttacactttttttgtaaaaaaagagagagagagaatacttTTCACAGCAAATGTTAGCTTTTGTGTACTAAATATTTTGGGGCCATGCAGGTTGCCATGGGCAACTCTTCAAGCTGTCTGAACAAATGCCAGTAAATGTACCATCAATAAACAGGGTGACTCTTACTGTTTTGCTTAAGGATATTTTGCTCAGGTTAAAAGGCGTATTTTCACTTCTATAAAACTTGTGtacattgtataataatattgcaCTGTTTTCTAATGTTAGTGTAAagtaaatgtgtacatttagagaaaaatatatattaacaaataaaacctgTATAAATAGGTTGTTTATTGGTTAGATAGAATCATTTTATGAAAGTCCTTTTAACAAGCTCTGAAGAAATTGTAAATCTACGATAATTGGAATCTTGCTTCGTCAGTTGGGGTACTGGATACATTGTTTCTGAGAATGAAATATCGGCTTAAAAACTGTGCATTGTTTGGCAGTCTGAGGAAGTGGGTTTAGCTTTGCctaaattgcatttgaaacccAGACTGCTTCCTATTAATCTCCTCGTAGTTTATCTGGAATggtcttttcttttcagatctAAAATGAAAACCGTTATTTGGGATTTGCTCAGATCACTTGATGCTAGCTTTCTTTTTCTATTCCGTTCCCGTTATTTCTTTTGTGCTTGTTTCTCTGCGGACTACAGCTGCAGCTTTGTTGAGAAGCCTCTCCTGTTACATGCAAGAGAAAAGTGCAAGACCAAAAGTAGCGCAGTCTGAGAAGACGCTCTGTACAGGACACTACACGTCTGTGCCAGACCTCGGTACCCCCTTCGCCATGTGATCGTGTCTTCACTCTCAAAGTGCTTTATGTTTGTAAATAGTCTTTTCATTTGTATGCCACATCGtttgatagtttaatttatttgttttgttagttacTGGCTGTTTTCACACTGATCAATTGGAAACTTTCCCCACTTAACTCGAAAGAAGGTAGTACCTTGCATTAGCTCATGTCTgtggtatttattatttactaatattaaatattagaaCAACATTAAGGTTACATATACAGTTCTCGATACGATTTTATGTTTCTGTGGAAGAAGGGATGCAAAAGCCCTTGAGTGATCCACTTGAATAAAGTACATAAGTACCCATCATGTATCGTTTGAGTTCTGTCTTTAAAACCAGTGAAAGTAATTGGAAGCACAAGCGGAAAGATACTCACAACCGCGGTTGTAAACGGCCCGTGGTGCGATCAAGTGTGTAAACATCGGTAGGCGCTGGTTGAGGTGCTATGAAATTTATAGTTATACAATTCTCCTTTCTGCCATATCTAGCTACTAGAGAATTTCTCACTTTATGACATCAGGGAATTCATTCAGATTGATAGAAAGACAAaagaatatatcatttttaaattattatttttgtgatgaTTCATATTCCAGTTTTGTACACTTTTTCATCGTTCAGTAAGTTCACATCAAATGTTGGCCTGTAGTTTTTCCAAATGTCTTtggtttaaataaagtttttcttttgtttttcatgtgatCAGATTTTTGTATCATGCTTTTATCGAGtgtcta
>TU101845
CGCTGTTTCCCTTCGCGGCAGCTCTTTGGGAGTCGTGTGGGCGTGTCCGGGTGTGAGACAGGCTCCGCCCCTCGGATCCCCATCTCTCCCGTTCAAACAGCTCGAGCctcggcagcagcagcagcagcgcctcGGTCCCCCGCATCCCCGCGTCGCCATCTTCCGCGACCGCCgcgtctctctccccctctcggCAGCCCTTCACCGGGGAGCACCTGGGAACAGCCCGGCTTGTAATCCAGAAATATATCTCTTCTGCATCTGGGAGGAAAGGATTGCATCGGAATAGCAGAAAGCAAGCGGGTATCGTTCTTGGTGATCGGACCTGAGAGACGGAATCTTGCCAGCGCCACTGAAAGCCGCCACAACCTCAGACCGCAACTCCAGCCCCCTTTCCCAGGATTTGGATTTTTCTCCCAGAAGCAGGTGCACAGACCAGTACCCCCATCGCGTTTCCACTGTTATTTCAAGACAATCTGGACTAGGGCTCGCGTTCTGGAGCATCCTTCCCTGGggaggcctttttttttttttttttcctccctctttccTGGACCAGTGACACCAAAACACTTTGGGACAATTTAAACCATGAGTGAATTCTGGTTGTGTTTCAACTGCTGCATCGCCGAACAGCCCCAGCCAAAGCGACGAAGGCGGATCGATCGGAGTATGATTGGAGAGCCAACAAACTTCGTCCACACGGCCCACGTAGGGTCAGGGGACCTGTTCAGTGGCATGAACTCAGTGAACTCAATTCAGAACCAAATGCAGTCTAAGGGAGGATACGGAGGAGGTGCCATACCAGTAAACGTGCAAATGCAGCTTGTGGACACAAAAGCAGGATAACttctatatacatttgtttgGTTCCTATGAGTATGTGTTTCCTCCTCCTCGCCTCCCTTATTGCCTTTGTTGACTGCTTTTCGTGTTTCTCATGAGACGGAAGTGAGGGTTCGTCCTTCAACATTCATCCCTGTGACTGTTGTTCTACGCAAAAAGATAAAGACAGTTTGGCATTCTGTTGCAATGAAGCTGCCATGCCTTTCAGAAGCTCCCACGGGGGCTCGGCCAAAGAGACATGGACTGATTGCTTCCctctccacccccaccccccctaaACCTAAATGGGATGTTAGcatgatggattttttttttttctgcaagtgCCAGTGCAACATGTAACATTGCTCTTCTGTGTAATTTGCTGTGAGCGGTCGTGctcattttttggtttgtttattttccgttctgttttcggttttgtttatttttggagtTGTAAATGTCAATGTTTGAAGGTCTGGAACCTACAAGcacaaaaccttttttaataCGATTTTATTAAGTTTTGTTCCTTCTTTGCTGTCCTGTTTGGCTGTCAGCGTCGTAGTATACTGAGTGTTTGTGAAGTGGCTTTGTACGGTGGCCTTTCAGTGCCAAAACGCACGTAGCTGCAGAATGATACTGTTgctgacaagaaaataaaatctggcaAAAGTTAATACCATTCCATAGGAAACAGAATTGTTACTTAGCTGCTTAAAATTGGTTTTatgctctttttttattttttattataatttctaaaCTGGCATTTCAAATGGCAATATGCTGTAAATGTGCAGTATACTTGAGTTAAAGAAGCCGGAGTTTCAGTGTGTAACCCGTGTAGTTACATGTGTATAATGTAGTGATGTTGTAGTGATCAGTGCTGGTGTGGCAACAATATTTATATCAAATTGATTATCTGACTGAGATGCAAATCTAAACTTAGTCTTATGGAGTAACAGCCTAGTCTGTTGCCTGCATTTAGTAActttacactttttttgtaaaaaaagagagagagagaatacttTTCACAGCAAATGTTAGCTTTTGTGTACTAAATATTTTGGGGCCATGCAGGTTGCCATGGGCAACTCTTCAAGCTGTCTGAACAAATGCCAGTAAATGTACCATCAATAAACAGGGTGACTCTTACTGTTTTGCTTAAGGATATTTTGCTCAGGTTAAAAGGCGTATTTTCACTTCTATAAAACTTGTGtacattgtataataatattgcaCTGTTTTCTAATGTTAGTGTAAagtaaatgtgtacatttagagaaaaatatatattaacaaataaaacctgTATAAATAGGTTGTTTATTGGTTAGATAGAATCATTTTATGAAAGTCCTTTTAACAAGCTCTGAAGAAATTGTAAATCTACGATAATTGGAATCTTGCTTCGTCAGTTGGGGTACTGGATACATTGTTTCTGAGAATGAAATATCGGCTTAAAAACTGTGCATTGTTTGGCAGTCTGAGGAAGTGGGTTTAGCTTTGCctaaattgcatttgaaacccAGACTGCTTCCTATTAATCTCCTCGTAGTTTATCTGGAATggtcttttcttttcagatctAAAATGAAAACCGTTATTTGGGATTTGCTCAGATCACTTGATGCTAGCTTTCTTTTTCTATTCCGTTCCCGTTATTTCTTTTGTGCTTGTTTCTCTGCGGACTACAGCTGCAGCTTTGTTGAGAAGCCTCTCCTGTTACATGCAAGAGAAAAGTGCAAGACCAAAAGTAGCGCAGTCTGAGAAGACGCTCTGTACAGGACACTACACGTCTGTGCCAGACCTCGGTACCCCCTTCGCCATGTGATCGTGTCTTCACTCTCAAAGTGCTTTATGTTTGTAAATAGTCTTTTCATTTGTATGCCACATCGtttgatagtttaatttatttgttttgttagttacTGGCTGTTTTCACACTGATCAATTGGAAACTTTCCCCACTTAACTCGAAAGAAGGTAGTACCTTGCATTAGCTCATGTCTgtggtatttattatttactaatattaaatattagaaCAACATTAAGGTTACATATACAGTTCTCGATACGATTTTATGTTTCTGTGGAAGAAGGGATGCAAAAGCCCTTGAGTGATCCACTTGAATAAAGTACATAAGTACCCATCATGTATCGTTTGAGTTCTGTCTTTAAAACCAGTGAAAGTAATTGGAAGCACAAGCGGAAAGATACTCACAACCGCGGTTGTAAACGGCCCGTGGTGCGATCAAGTGTGTAAACATCGGTAGGCGCTGGTTGAGGTGCTATGAAATTTATAGTTATACAATTCTCCTTTCTGCCATATCTAGCTACTAGAGAATTTCTCACTTTATGACATCAGGGAATTCATTCAGATTGATAGAAAGACAAaagaatatatcatttttaaattattatttttgtgatgaTTCATATTCCAGTTTTGTACACTTTTTCATCGTTCAGTAAGTTCACATCAAATGTTGGCCTGTAGTTTTTCCAAATGTCTTtggtttaaataaagtttttcttttgtttttcatgtg

Function

symbol description
cdc42se2 Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE2 (CDC42 small effector 2).

NR:

description
CDC42 small effector protein 2

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010563 False 2843 mRNA 0.38 4 35513000 35526224
TU101845 True 3389 lncRNA 0.42 5 35480800 35526188

Neighbor

gene id symbol gene type direction distance location
AMCG00010560 chsy3,LOC107573232,LOC107665461 coding upstream 115519 35363710 ~ 35365281 (+)
AMCG00010558 chsy3,LOC104965884 coding upstream 215414 35261967 ~ 35265386 (+)
AMCG00010559 NA coding upstream 223509 35250836 ~ 35257291 (+)
AMCG00010556 adamts19 coding upstream 230643 35216218 ~ 35250157 (+)
AMCG00010555 NA coding upstream 287291 35189383 ~ 35193509 (+)
AMCG00010564 sptlc1 coding downstream 17825 35544049 ~ 35554999 (+)
AMCG00010566 ror2,LOC102784735,LOC107720387 coding downstream 77914 35604138 ~ 35612541 (+)
AMCG00010570 NA coding downstream 174437 35700661 ~ 35701496 (+)
AMCG00010569 auh,LOC107720385 coding downstream 193011 35719235 ~ 35731357 (+)
AMCG00010568 auh coding downstream 220313 35746537 ~ 35751114 (+)
G81586 NA non-coding upstream 378216 35102352 ~ 35102584 (+)
G81583 NA non-coding upstream 430188 35050405 ~ 35050612 (+)
G81582 NA non-coding upstream 441333 35039257 ~ 35039467 (+)
G81581 LOC108412713 non-coding upstream 463668 35016909 ~ 35017132 (+)
G81580 NA non-coding upstream 464466 35016075 ~ 35016334 (+)
G81675 NA non-coding downstream 135939 35662163 ~ 35666680 (+)
G81707 NA non-coding downstream 176465 35702689 ~ 35704527 (+)
G81710 NA non-coding downstream 181293 35707517 ~ 35713953 (+)
G81812 NA non-coding downstream 618614 36144838 ~ 36145081 (+)
G81814 NA non-coding downstream 621319 36147543 ~ 36148008 (+)
AMCG00010562 NA other upstream 3210 35470335 ~ 35477590 (+)
G81576 NA other upstream 468107 35012315 ~ 35012693 (+)
AMCG00010545 megf10 other upstream 634924 34756519 ~ 34845876 (+)
G81496 NA other upstream 773406 34701438 ~ 34707394 (+)
AMCG00010529 NA other upstream 1542563 33903815 ~ 33938237 (+)
AMCG00010578 NA other downstream 550889 36077113 ~ 36079892 (+)
AMCG00010585 NA other downstream 565315 36091539 ~ 36094497 (+)
G81971 NA other downstream 1704204 37230428 ~ 37251169 (+)
G81987 NA other downstream 1735100 37261324 ~ 37264049 (+)
G82192 NA other downstream 2359996 37886220 ~ 37888163 (+)

Expression


Co-expression Network