AMCG00010564 (sptlc1)


Basic Information

Item Value
gene id AMCG00010564
gene name sptlc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35544049 ~ 35554999 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010564
CATGAGTGTGTCGGGCTCGATGACGTTTCTGGTCACATGGTTGAAGTATCAAGATGGCGTCAGGACAACAGTGGGTGTTAGTGGAGATGGTGCAGGCTTTCTACGAGGAGAAAGAGGAGCTGATTGAAGAATGGCAGCCGGAGCCCTTAGTGCCCCCTGTGTCGAAGGACCACCCTTCTCTGAATTATAACATTGTTTCAGGACCTCCAAGCCACAAGATCACAGTGAACGGGAAGGAATGCATTAACTTTGCCTCGTTTAATTTCCTGGGCCTGCTTGATAATGAGCGCGTTAAGAACAAAGCTTTAGCATCCCTCACTAAGTATGGAGTTGGTACTTGTGGACCCAGAGGATTTTATGGCACGTTTGATGTCCACTTGGAGTTAGAAGACCGTTTGGCGAAGTTCATGAGAACAGAGGAGGCTATAATTTATTCCTATGGATTTGCAACCATCGCCAGCGCCATCCCTGCGTACTCGAAGAGGGgagatattgtgtttgtgGATGAGGCAGCTTGTTTTTCAATTCAGAAGGGGTTGCAAGCCTCCCGCAGTTTCCTTAAATACTTCAAACACAACGATATGGAGGACTTGGAGCGACTTTTGAAAGAGCAAGAGATTGAGGATCAAAAGAATCCCCGTAAAGCACGCGTGACCCGGAGGTTCATCGTGGTGGAGGGGCTTTACATGAACACCGGAGACGTCTGCCCTCTCCCAGACTTGGTGAGACTGAAGTACAAGTACAAAGTGCGCATTTTCCTGGAGGAGAGCCTGTCTTTCGGAGTTCTGGGAGAACATGGCCGAGGTGTGACTGAACATTTTGGAGTGAATATTGATGATATCGATCTCATCAGCGCCAACATGGAGAACGCCGTGGCTTCGATCGGTGGCTTCTGCTGTGGGAGATCTTTTGTTATTGATCACCAGCGTCTCTCTGGGCAGGGTTATTGCTTTTCAGCCTCGTTGCCACCCATGCTAGCGGCAGCTGCGATGGAGGCCCTGAACATTATGGAAGAAGATCCAGACATTTTCGTTGTGTTGAGGAACAAATGCAAGCACATGCACAAAGCACTACAAGGAATTTCCGGTCTGAAGGTAGTTGGGGAATCTTTCTCGCCAGCTTTTCATTTACAACTGGAGAAGAGTTCTGGATCGAGGGAGGCTGATGTCAAATTATTGCGGGCGATTGTAGATTATTGTATGGACCGGAAGATTGCTCTGACCCAGGCTCGCTACTTGGACAAGGAAGAGAGGTTTCTTCCCCCACCTACCGTTCGGGTGGTAGTTACCGTGGAACAGACTGAAGACGAACTGGAATTGGCAGCATCTTTGATCAAAGAAGCGGCTCAAACCATCCTTAAGTGATCTGCGTTGAGACCTGAGCAGCCACGACGAAGGGGTTTCACTGATTGGTGACATCAGTCTTAAAGGGGTTGGGTGGAGAGTGTGTGTGGCAGGTCCGTTGCTATCAAAAACGTTTCCAAAAACTCAAAAAGTAAGCCTAGATGCCTACAAGCATTTATCTCTATAAAATCATGCACATCCAGTTTATTTAACGTTCCTTCAAATAATATGATTGTACCATTGGATCTAGTTATGTTTTAGCGATGGTATGCAAAGACATTtctgaaactaaataaatgtgacaaGCGAGCTTCACACTTTGTGATTCCACTTTTCATCCTTCCATGGTTTATGATGTTCAGATACTAAAGGTGGAGgggatatattttttgtgttttaatatacatttgaaaccTATCATTGgaggagtatttttttttttatgtagaaatgcttttataaatattttctcaGATACAACTTTCTTCACTacgttatttttttcatattaactGAAACCAAATGGCTTATGTATGTATAAACTCTTATACATGTATAAACTTCCTCTCGTTTTTTCAGTAGCATCCTCGGCTTTTTAAACCGCACAATAGTTACTATACAGTTACTACACAGGGCAGAATATTTTCTACACAAAGGCTAGTTGCAGAGAATACTAAGTGACAgtacaaaatctttttttttcttccaaaagcATACATGTCAGCTAGCAGTTTAACTGTATCTGACGGTCTGTGAATTATTGGTCTTTCTGACTgtttactgtagtttttttgttaatctGCACAAATGCAATGTTTCTCATGCCAGAACCGTCCAAACTTTAGTCACCAAGAGGATGTCTATGTAACTATCAATGTTGTTGCATTTCCAACTGATATCACTATTATTTTGCAGAGATGCatattgtcattttcatgatCTAGTCtagtataacaaataaaatgtcagtcatttatatttttatcaaCATCTGTGGCAAATTACATTATTCACTGGCATTTGTAAAATAGCCTGTAGTccaatgtataaaaaataatgtggactttttgtataaaattatatgaactgtattcatttttacaaaCTATTAGATATGCAGTTTATAATGAATGTGCCTTTTTGTTGCTGCTAACAGTACTATGGGTTGGAGAgaatatgattaaaataaatccaaacaaaGTAA

Function

symbol description
sptlc1 Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 1A. Orthologous to human SPTLC1 (serine palmitoyltransferase long chain base subunit 1).

NR:

description
PREDICTED: serine palmitoyltransferase 1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010564 True 2547 mRNA 0.41 14 35544049 35554999

Neighbor

gene id symbol gene type direction distance location
AMCG00010560 chsy3,LOC107573232,LOC107665461 coding upstream 178768 35363710 ~ 35365281 (+)
AMCG00010558 chsy3,LOC104965884 coding upstream 278663 35261967 ~ 35265386 (+)
AMCG00010559 NA coding upstream 286758 35250836 ~ 35257291 (+)
AMCG00010556 adamts19 coding upstream 293892 35216218 ~ 35250157 (+)
AMCG00010555 NA coding upstream 350540 35189383 ~ 35193509 (+)
AMCG00010566 ror2,LOC102784735,LOC107720387 coding downstream 49139 35604138 ~ 35612541 (+)
AMCG00010570 NA coding downstream 145662 35700661 ~ 35701496 (+)
AMCG00010569 auh,LOC107720385 coding downstream 164236 35719235 ~ 35731357 (+)
AMCG00010568 auh coding downstream 191538 35746537 ~ 35751114 (+)
AMCG00010572 diras2,LOC107560410,LOC107670053,LOC107736992,LOC107702570 coding downstream 248225 35803224 ~ 35808390 (+)
G81586 NA non-coding upstream 441465 35102352 ~ 35102584 (+)
G81583 NA non-coding upstream 493437 35050405 ~ 35050612 (+)
G81582 NA non-coding upstream 504582 35039257 ~ 35039467 (+)
G81581 LOC108412713 non-coding upstream 526917 35016909 ~ 35017132 (+)
G81580 NA non-coding upstream 527715 35016075 ~ 35016334 (+)
G81675 NA non-coding downstream 107164 35662163 ~ 35666680 (+)
G81707 NA non-coding downstream 147690 35702689 ~ 35704527 (+)
G81710 NA non-coding downstream 152518 35707517 ~ 35713953 (+)
G81812 NA non-coding downstream 589839 36144838 ~ 36145081 (+)
G81814 NA non-coding downstream 592544 36147543 ~ 36148008 (+)
AMCG00010563 cdc42se2 other upstream 17825 35480800 ~ 35526224 (+)
AMCG00010562 NA other upstream 66459 35470335 ~ 35477590 (+)
G81576 NA other upstream 531356 35012315 ~ 35012693 (+)
AMCG00010545 megf10 other upstream 698173 34756519 ~ 34845876 (+)
G81496 NA other upstream 836655 34701438 ~ 34707394 (+)
AMCG00010578 NA other downstream 522114 36077113 ~ 36079892 (+)
AMCG00010585 NA other downstream 536540 36091539 ~ 36094497 (+)
G81971 NA other downstream 1675429 37230428 ~ 37251169 (+)
G81987 NA other downstream 1706325 37261324 ~ 37264049 (+)
G82192 NA other downstream 2331221 37886220 ~ 37888163 (+)

Expression


Co-expression Network