AMCG00010585


Basic Information

Item Value
gene id AMCG00010585
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 36091539 ~ 36094497 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010585
AAATGGCAGCTGCCAGTAGGGTCGTACAGGTactgtaaaaatacaacttGACGAGTGAAAATGCCTGATTTGCTGTGTTTCCTCGGTGTAGTTAAACGAGACACACACGGGACTGTACACGCGTGTGGACGCCGCAGTCCCACGCTGTCAACCTCGGCTGCATCAGAGAAGAGACGACACCTATTTCAGTGTCcttgcaaagaaagaaagaaacagaaagcaataataataataataatattacaatactCGCTAGGTATTTATTCCGTGAGTTTGTGATTTTGCTTGCatggcaGTGCGGCCTCACGCTCCTCTGATTAAATTTCCTGATCGGCTGAGCACCCCAAGGCCCAGTGGTGAGCATTAAACCGTGAATCCATCCAAACACGCGGTCGGCCACTGTGCTCTATTATATCATACCGTGGGAGACAAAGATGAGGCAACAGGGCACTATCACAGACGCCACAAACAGTGGGCAGAGATGCGTGCGCAGAGCCAGTGATAGCCGGGGATCACCGTGAAGGGAACGGGTCCAAGAAGCACTGAAAATGGTGGTTGGCACCCCGGCACAAACTCCTGGGACCCACAGTTTACCACAGTCTGTCAGCGCTGCCTCCAGACCACCGGGGACCAGCAGCGTTGCCCCCCGGAGCCACACGGCCGCCCCCCCGGACACTGCCGCCACTATCGCAGGCCTGCCCCCGCGGTACCGCAGAAGGACAATCGCCACAGAGGAGATGGATTACATCCAGCGCGGGGGACCAGAGTGACCCGAATTCTTCTGTGTTAACCAACCAAAGCCCTTATTTGTGGAAatctcttctgtttgtttttcccgaAAATGTACAcagcaggttttatttttgttgtatgttcTGCGGATTCAAATTAAAAGATGTTCAATTCATGaatggtttccttttttctgacagtaataataaattatatttaaaaatgtattttgcctcGTTATAATACCGCATcgccattgtttgtttttctgagctTGTATTAGAACCATATGTATGATAGAATGATCCTATAattacggtggccctgaagtgcaaaacacaaaaataa
>TU102028
TCCGTCAGGAAGGTCAACATGGGAAGCAAAATGGCAGCTGCCAGTAGGGTCGTACAGgcaGTGCGGCCTCACGCTCCTCTGATTAAATTTCCTGATCGGCTGAGCACCCCAAGGCCCAGTGTCCAAGAAGCACTGAAAATGGTGGTTGGCACCCCGGCACAAACTCCTGGGACCCACAGTTTACCACAGTCTGTCAGCGCTGCCTCCAGACCACCGGGGACCAGCAGCGTTGCCCCCCGGAGCCACACGGCCGCCCCCCCGGACACTGCCGCCACTATCGCAGGCCTGCCCCCGCGGTACCGCAGAAGGACAATCGCCACAGAGGAGATGGATTACATCCAGCGCGGGGGACCAGAGTGACCCGAATTCTTCTGTGTTAACCAACCAAAGCCCTTATTTGTGGAAatctcttctgtttgtttttcccgaAAATGTACAcagcaggttttatttttgttgtatgttcTGCGGATTCAAATTAAAAGATGTTCAATTCATGaatggtttccttttttctgacagtaataataaattatatttaaaaatgta

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0015849 organic acid transport biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0046942 carboxylic acid transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010585 True 1080 mRNA 0.48 4 36091567 36094497
TU102028 False 549 TUCP 0.51 4 36091539 36094376

Neighbor

gene id symbol gene type direction distance location
AMCG00010579 NA coding upstream 102574 35985922 ~ 35988965 (+)
AMCG00010574 NA coding upstream 147266 35942847 ~ 35944273 (+)
AMCG00010572 diras2,LOC107560410,LOC107670053,LOC107736992,LOC107702570 coding upstream 283149 35803224 ~ 35808390 (+)
AMCG00010568 auh coding upstream 340425 35746537 ~ 35751114 (+)
AMCG00010569 auh,LOC107720385 coding upstream 360182 35719235 ~ 35731357 (+)
AMCG00010582 NA coding downstream 1227 36095724 ~ 36097051 (+)
AMCG00010583 NA coding downstream 6911 36101408 ~ 36108043 (+)
AMCG00010584 NA coding downstream 34332 36128829 ~ 36139434 (+)
AMCG00010589 NA coding downstream 161734 36256231 ~ 36256602 (+)
AMCG00010590 rab3c,LOC107599832,LOC107700568 coding downstream 180419 36274916 ~ 36292339 (+)
G81710 NA non-coding upstream 377586 35707517 ~ 35713953 (+)
G81707 NA non-coding upstream 387012 35702689 ~ 35704527 (+)
G81675 NA non-coding upstream 424859 35662163 ~ 35666680 (+)
G81586 NA non-coding upstream 988955 35102352 ~ 35102584 (+)
G81583 NA non-coding upstream 1040927 35050405 ~ 35050612 (+)
G81812 NA non-coding downstream 50341 36144838 ~ 36145081 (+)
G81814 NA non-coding downstream 53046 36147543 ~ 36148008 (+)
G81880 NA non-coding downstream 533404 36627901 ~ 36628706 (+)
G81954 NA non-coding downstream 1018478 37112975 ~ 37113181 (+)
G81983 NA non-coding downstream 1157670 37252167 ~ 37253628 (+)
AMCG00010578 NA other upstream 11647 36077113 ~ 36079892 (+)
AMCG00010563 cdc42se2 other upstream 565315 35480800 ~ 35526224 (+)
AMCG00010562 NA other upstream 613949 35470335 ~ 35477590 (+)
G81576 NA other upstream 1078846 35012315 ~ 35012693 (+)
AMCG00010545 megf10 other upstream 1245663 34756519 ~ 34845876 (+)
G81971 NA other downstream 1135931 37230428 ~ 37251169 (+)
G81987 NA other downstream 1166827 37261324 ~ 37264049 (+)
G82192 NA other downstream 1791723 37886220 ~ 37888163 (+)
G82236 NA other downstream 2074659 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 2152524 38247021 ~ 38252010 (+)

Expression


Co-expression Network