AMCG00010601 (zswim6,LOC108425190,LOC107704169)


Basic Information

Item Value
gene id AMCG00010601
gene name zswim6,LOC108425190,LOC107704169
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 36741485 ~ 36770547 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010601
atgatcatggTTATTTATGCGTTCAAATCTGCCTTCGCGGCCCCGTATCCTTTGCGGATTAGCTgcTTTCACCTGAGCGGCACAGTGACGGAACCGGCCTCCCAGTCGGAGCCCGAGATCGTCTGCAACGTGGCCATCAGCTTCGACCGCTGCAAGATTACCTCAGTGACCTGTAGTTGTGGAAACAAGGACATCTTTTACTGTGCACACGTGGTCGCGCTGTCTTTATACCGGATCCGCAAGCCGGACCAGGTCAAACTGCATCTTCCCATTTCAGAGACCCTCTTTCAAATGAACAGAGACCAACTACAGAAATTTGTCCAGTATTTAATCACAGTGCACCACACGGAGGTATTACCCACTGCCCAGAAACTAGCCGATGAAATCCTGTCCCAGAACTCGGAAATCAATCAAGTGCACGGAGCCCCCGACCCCACGGCGGGCGCCAGTATAGACGACGAGAACTGCTGGCACCTGGACGAGGAGCAGGTCCAGGAACAGGTTAAACTTTTCCTCTCCCAGGGTGGTTACCACGGGTCCGGGAAGCAGCTCAACCTCCTCTTTGCGAAGGTGCGGGAGATGCTGAAGATGAGGGACTCGAACGGGGCGCGCATGTTAACCCTGATCACAGAGCAGTTCATGGCGGACCCCCGGCTCTCTCTCTGGAGGCAGCAGGGCACCACCATGACGGACAAGTACCGGCAGCTCTGGGACGAATTAGGTGCCCTGTGGATGTGCATAGTTTTGAATCCTCACTGCAAGCCAGAGCAGAAGGCAGGCTGGCTGAGGCAACTGAAGAAGTGGAACAGCGTGGACGTTTGTCCCTGGGAAGACGGTAACCACGGAAACGAGCTGCCCAATTTAACCAATGCCTTGCCTCAGGGTGCGAATGCTAACCAAGATTCAGCCAACAGGCCTCACCGGACGGTTTTCACACGAGCCATCGAAGCGTGCGATCTCCACTGGCAGGACAGCCACTTGCAGCACATAATCAGCAGCGACCTCTACACCAACTACTGTTACCATGACAACACTGAAAATTCACTCTTCGACTCTCGCGGTTGGCCCCTATGGCACGAACACGTCCCGACGGCCTGCGCTCGGGTGGATGCACTGAGGTCTCATGGTTACCCGAGAGAGGCCCTGCGGCTGGCCATCGCCATCGTCAACACTCTGCGGAGGCAGCAGCAGAAACAGCTGGAGCTGTTCCGGGGACACAAGAAAGAGCTGCTTCACAAAGGCGTCACCTCAATCACCAACCTGGAGGGCTGGGTGGGACACCCCCTAGACCCCATCGGCACCCTCTTCAGCACGTTGATGGAGAGCTGCCGGGGGGATGAGGACAGCATGCCCGGCTTCTCTGACTTCACAGACGCTATGGGCCAGTCAAAGTGCATGGAGTTCCAGCTGTTCCCGGCGCAGCGGCTGCTGGAGGAGGGCGAGTCGTACCTGGCGCTGGCCGTGGAGATGGCGCTGGTGGGGCTGGGTCAGCAGAGGATCATGCCCGACGGCCTGTATGCCCAGGAGAAGGTCTGCCGCAACGAGGAGCAGCTCATCGCCAAGCTGCAGGAGGTCGACCTCGACGACACGCTCGTCAAGATTTTCCGCAAACAAGCAGTCTTCCTGTTAGAAGGTGGGCCATACAGTGGTTTGGGGGAGATCATTTACAGAGAGAGCGTTCCAATGCACACCTTCGCCAAGTATCTGTTCACCTCTCTCCTACCTCACGATGCTGAACTGGCATACAAAATTGCACTGAGAGCAATGCGGTTACCGGTGTTGGAGTCCAGCGCACCCACAGGAGACATGTCCCGGCCGCACCACATCGTGTCTGTCGTCCCCAACCGATATCCCCGCTGGTTCACCCTGAGCCACATCGAGTCCCAGCAGTGCGAGCTGGCCTCCACCATGCTGACCGCGGCCAAAGGCGATGGTCGGAGGCTAGAAACAGTGTTAGAATCCATCCAGAAAAATATCCACTCATCGTCACACATTTTCAAACTCGCCCAGGATGCGTTCAAAATAGCGACCCTCATGGACAGTTTGCCAGACATCACTCTGCTTAAAGTATCTCTGGAGCTGGGACTTCAGGTAATGCGAATGACTCTGTCAACGCTAAACTGGCGGCGACGCGAGATGGTACGGTGGTTAGTTACTTGTGCCACGGAAGTAGGGGTCTATGCGCTAGACAGCATCATGCAGAGCTGGTTCACCCTCTTCACTCCCACGGAGGCCACTAGTATCGTCGCCACGACCGTGATGTCCAATAGCACCATTGTGCGGCTCCACCTGGACTGCCACCAGCAGGAGAACCTGGCGAGCAGCGCACGCACCCTGGCCCTGCAGTGCGCCATGAAGGACCCCCAGAACTGCGCGCTCTCGGCCCTCACGCTGTGCGAGAAGGACCACATCGCCTTCGAGACGGCCTACCAGATAGTGCTGGACGCTGCCACCACGGGCATGAGCTACACGCAGCTCTTCACTATCGCGCGCTACATGGAGCACCGCGGGTATCCGATGCGGGCATACAAGCTGGCGACGCTGGCCATGACCCACCTCAACCTGAGCTACAACCAGGACACACACCCGGCCATCAACGACGTGCTGTGGGCCTGCGCTCTGAGCCACTCGCTGGGCAAGAATGAGCTGGCCGCCATCATCCCGCTGGTGGTCAAGAGCGTCAAGTGCGCCACGGTGCTGTCGGACATTTTGCGCCGGTGCACGCTGACCACGCCGGGCATGGTGGCGCTCCACGGGCGCAGGAACTCTGGGAAGTTAATGTCACTGGACAAAGCCCCACTAAGACAGCTTTTGGACGCCACGATCGGGGCCTACATCAACACCACGCACTCGCGGCTGACCCACATCAGCCCCCGGCACTATAGCGAATTTATCGAGTTCCTGAGCAAGGCCAGAGAGACATTCCTGATGGCTCACGACGGACACATCCAGTTTACACAGTTCATCGACAACCTAAAACAGATCTACAAAGGCAAAAAGAAACTCATGATGTTGGTCCGGGAGAGATTCGGTTGACGGATTTTCCCCGGAGTCCTTCTTTTTACTTGAGCCTGCCTTTGTACCCTTTTtaacttaagaaaaaaatgaaaaaatgaaaaaaaaaaaacatgaaaatggggaaaaaaaaaaaa

Function

symbol description
zswim6 Is expressed in hindbrain; midbrain; retina; and telencephalon. Human ortholog(s) of this gene implicated in acromelic frontonasal dysostosis. Orthologous to human ZSWIM6 (zinc finger SWIM-type containing 6).

NR:

description
PREDICTED: zinc finger SWIM domain-containing protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010601 True 3152 mRNA 0.56 14 36741485 36770547

Neighbor

gene id symbol gene type direction distance location
AMCG00010598 NA coding upstream 64449 36654514 ~ 36677036 (+)
AMCG00010591 LOC108425194,LOC108277218,LOC107602252,LOC107709189,LOC107704125 coding upstream 440344 36299973 ~ 36301141 (+)
AMCG00010590 rab3c,LOC107599832,LOC107700568 coding upstream 449146 36274916 ~ 36292339 (+)
AMCG00010589 NA coding upstream 484883 36256231 ~ 36256602 (+)
AMCG00010584 NA coding upstream 602051 36128829 ~ 36139434 (+)
AMCG00010603 NA coding downstream 72496 36843043 ~ 36856935 (+)
AMCG00010604 LOC108425189,LOC107554527,LOC107706776,LOC108276927 coding downstream 105179 36875726 ~ 36896641 (+)
AMCG00010605 ipo11 coding downstream 133835 36904382 ~ 36915990 (+)
AMCG00010608 ipo11 coding downstream 233838 37004385 ~ 37009695 (+)
AMCG00010609 NA coding downstream 248829 37019376 ~ 37030069 (+)
G81880 NA non-coding upstream 112779 36627901 ~ 36628706 (+)
G81814 NA non-coding upstream 593477 36147543 ~ 36148008 (+)
G81812 NA non-coding upstream 596404 36144838 ~ 36145081 (+)
G81710 NA non-coding upstream 1027532 35707517 ~ 35713953 (+)
G81707 NA non-coding upstream 1036958 35702689 ~ 35704527 (+)
G81954 NA non-coding downstream 342428 37112975 ~ 37113181 (+)
G81983 NA non-coding downstream 481620 37252167 ~ 37253628 (+)
G81990 NA non-coding downstream 496215 37266762 ~ 37267347 (+)
G82053 NA non-coding downstream 680574 37451121 ~ 37455288 (+)
G82059 NA non-coding downstream 727195 37497742 ~ 37498116 (+)
AMCG00010585 NA other upstream 646988 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 661593 36077113 ~ 36079892 (+)
AMCG00010563 cdc42se2 other upstream 1215261 35480800 ~ 35526224 (+)
AMCG00010562 NA other upstream 1263895 35470335 ~ 35477590 (+)
G81576 NA other upstream 1728792 35012315 ~ 35012693 (+)
G81971 NA other downstream 459881 37230428 ~ 37251169 (+)
G81987 NA other downstream 490777 37261324 ~ 37264049 (+)
G82192 NA other downstream 1115673 37886220 ~ 37888163 (+)
G82236 NA other downstream 1398609 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 1476474 38247021 ~ 38252010 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003077 zswim6 coding NC_007121.7 CM002894.2 44296863 ~ 44341288 (-)
grasscarp (Ctenopharyngodon idella) CI01000168_00179369_00184905 ZSWIM6 coding CI01000168 null 178605 ~ 184905 (-)