AMCG00010634 (ankrd55,LOC107578565)


Basic Information

Item Value
gene id AMCG00010634
gene name ankrd55,LOC107578565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37768779 ~ 37781102 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010634
ATGACTGTGACCGGATTCACGCTTCTGTCTCAACCAGGGGACTCAGCTGAGGAAGTTGACCTGAATGTGGTGTACCAGGCAGCTGCTAATGGAGACGTCAACACCCTGACAGCAATAATTCGCGAGGATCCCTCCATTTTGGAATGCTGTGACAGCGAGGGGTCCACGCCTCTGATGCACGCTGTTTCAGGACGCCAGGTGGACACTGTGAAGTTGCTGTTGAAAATGGGGGCCTCCATCAACACTCAAGATGCATGTGGAAggacctccctctctctggcaaCATACCTGggTTGGctggaggggtgtgtgtgccTGCTGCGAAACGGAGCCAAACAGAACATCGCGGACAAAAACGGGCGGCTGCCCCTGCACGCGGCCACGGCGGAAACCGACCTCAGGTTAATGGCGGTACTGTTGCAGCAATCTACACTGTGTGAGATCAATCATCAAGATAACGAGGGCATGACTCCCCTGCACTGGGCGGCGTTCCACAACCGCCCCCAGCACATCCAGGCCTTACTGCAGAAGGGCGCCGACCCCACCCTGGTGGACAAGGACTTCAAGACTGCCCTACACTGGGCTGTGCAGAGCGGGAACCGCTTCCTGTGCTCGCTGATCCTCGACCACCAACTGGGCTCATCCGTGATCAACTATGACGACGAGAACGGGAAGACCTGTGTGCACATCGCCGCGGCTGCGGGCTACAGCGACATCATCTACGAGCTGGCGCGGGTTCCCGAGACCAACCTGCAGGCCCTGGATGTCGACGACAGGTACGCCCGCCGGGTACCGGTGTCCGCACGGTCCCCCCGCTCTGTGCGGCTCGGAATCAGCGGGACTCCTCTGCACTGGGCGGCCGCGGCGGGGAAGGCGGACTGTGTGCAGGCCCTCCTCCAGCTGGGGGTGGAGCATGGGCCCCGGGACATCAACGAGAACACCCCCCTAACATACGCAATGTACTGTGGCCACACGGCATGCATCAAACTGCTCTCCCTGGAGAACAGATCTGACTCTTCAAGACAGTTGCCGTCTCGGAACAACCACCCGTCTCTGAAAAAGGAGGGGAGGTTCAGCGTCCTGAACCAGATCTTTTCCTGCAAGAAAAAGAAGGACGACCAAATGACAGGGCAGAAAGAGAAATGCCAGTACCTGAGGGAGGAGACGTCTGAAGTCGATGACATCATCACCATGTTTGACTGCATCATGGACACCTCTGGGAAAAGCCTCTCAGAGCACCACGGCGGTGGCATGGAAGCCGGGCAGAGGTCGGGCGACCCTCAGAAACCCCACCTCATGGACAAAACCCCACCAAAGGAATACAAGGGACTGCCGCCCATTCGGACACAAAGTCTTCCCCCGCTCACCCTCGGCGGCTCTGCATCGGCCTCGGCCCTGAGCTCGGTGCCCTGCGGCCCCACTGGGCTGATCGCCTACCACTTCGCACACCGGTCCCAGAAGAGCAGGAGCGAACACGACCTGTTCGACAGCAGGACCAAGTGCCAGGCCTTTCTGAGCAACGCGTGGAAGTCGGAGGCCAATCAGGTCCTGTCCCAAAAGGCCTGGACGGCTCCCCCCACGGAGAAGCTGCTGGACGGCTTCCTGCAACAGAGGTCCAGTCAGGTGGATCTTCTCTACCCGGCTCAGCTCCCTTACCTTCACAGGAAGGGCCTCGCACAAAATGTACACCAGCTTCCCCTGGACAGGTTGAGGATGAGAGAGACGGCTCTGGCGCGGAACAGCTTGGCTCCCATACGCGATCACTGCACCCACAGGTTCACCCTACCGCCCAACCAGGTCTCTCAGGGGGTGAAGAAATCAAAGTCCTTGCCCCTCGGCTCCCTGTGTGGCAGTCCGGCGGCTCTGCCTCCTGCCCTTACCTCAAAGTCCCCCCGCGGTGGGGTCCCCCAGAGCCACTCACTGTGCTCCTTCCTGCCCGTCCTGTCGGGGGACCCCCTTCGGACTATCAGAGTTCTCCCAGCGATCCCGTCCCAGAGGAAACAGAGCCCGTCCCCCGCAGAGACCCCGAAGACAGATTCTGACAACAGCAACTGA

Function

symbol description
ankrd55 Acts upstream of or within glucose homeostasis and type B pancreatic cell development. Orthologous to human ANKRD55 (ankyrin repeat domain 55).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 55

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010634 True 2055 mRNA 0.60 10 37768779 37781102

Neighbor

gene id symbol gene type direction distance location
AMCG00010626 NA coding upstream 274039 37482438 ~ 37494740 (+)
AMCG00010627 NA coding upstream 286899 37474910 ~ 37481880 (+)
AMCG00010620 NA coding upstream 367980 37394062 ~ 37400799 (+)
AMCG00010621 NA coding upstream 375572 37388703 ~ 37393207 (+)
AMCG00010622 NA coding upstream 402287 37363078 ~ 37366492 (+)
AMCG00010635 NA coding downstream 14427 37795529 ~ 37809247 (+)
AMCG00010636 NA coding downstream 83960 37865062 ~ 37873485 (+)
AMCG00010641 LOC106571427 coding downstream 179650 37960752 ~ 37971680 (+)
AMCG00010644 LOC108427269,LOC105894604 coding downstream 228957 38010059 ~ 38025329 (+)
AMCG00010643 NA coding downstream 262643 38043745 ~ 38050947 (+)
G82140 NA non-coding upstream 25048 37743525 ~ 37743731 (+)
G82092 NA non-coding upstream 107624 37658307 ~ 37661155 (+)
G82063 NA non-coding upstream 212178 37554453 ~ 37556601 (+)
G82057 NA non-coding upstream 235635 37526083 ~ 37533144 (+)
G82056 NA non-coding upstream 248041 37499117 ~ 37520738 (+)
G82156 NA non-coding downstream 44595 37825697 ~ 37825916 (+)
G82228 NA non-coding downstream 306291 38087393 ~ 38093714 (+)
G82229 NA non-coding downstream 314519 38095621 ~ 38095902 (+)
G82230 NA non-coding downstream 315924 38097026 ~ 38097286 (+)
G82231 NA non-coding downstream 329147 38110249 ~ 38110555 (+)
G81987 NA other upstream 504730 37261324 ~ 37264049 (+)
G81971 NA other upstream 517610 37230428 ~ 37251169 (+)
AMCG00010585 NA other upstream 1674282 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 1688887 36077113 ~ 36079892 (+)
AMCG00010563 cdc42se2 other upstream 2242555 35480800 ~ 35526224 (+)
G82192 NA other downstream 105118 37886220 ~ 37888163 (+)
G82236 NA other downstream 388054 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 465919 38247021 ~ 38252010 (+)
AMCG00010655 NA other downstream 567176 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 586567 38367669 ~ 38372651 (+)

Expression


Co-expression Network