AMCG00010643


Basic Information

Item Value
gene id AMCG00010643
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38043745 ~ 38050947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010643
CGTCCGACTCCATCAGAGGCGACGCAGGATGAAGCGCTACAATGTTAATAGAGGGCAATAATGGCGGCGCGGACCTGAAGGAGGACAGCGCGCAGTGATGGCCAGACTCACCGTGAAGAAACTTCTGCTCTTCTGCCTTTGCTTttcagctttcttttttcttctccttacACTCCAGGTGGTGGTGGAGCTGGGCCAGTCTGAGAGGAAGGGCCAGAGACCCCGTGTGAAAGGACACAGGGGACCGGACGTCCAGCAGCAGGCCCTTCAGGAGAATCCCCTCCGGACCGCCGGGAAAGAACTGTCCTCCTCGGCCCACCAGCCTCCCGTTATTGTCTGGTGGTCCCCCCTTACTGGGGAGATGGGCCGACTGGGAGAGTGTGGAGCAAACCAGTGCTTCTTCACCATCAATAAGACCTACCATCACCATCCCAGCACAGAGGCCTTCCTGTTTTATGGCACCGACTTCAACATAGAGAGCCTCCCCCTCCCGCGCAAACCGCACCACCACTGGGCCCTGTTCCATGAAGAGTCTCCCAAGAACAACTACAAGCTCTTCCACGAGGCCACCATCACCCTGTTCAACCACACGGCCACCTTCAGCCGCCACTCCCACCTGCCCCTCACCACGCAGTACCTGCCGGACCTGGACGCCCTGACCTCCCGGGACTTTGTGGTCCCCCTGTCCCAGAAGAACAGCCTGAGGGCCACGCTGGCCCCCGTGGTGTACGTGCAGTCGGACTGCGACCCGCCCTCGGACAGGGACAGCTACGTGCGGGAGCTGATGAGGCACATTGCGGTGGACTCGTACGGGGAGTGTCTGCACAACCGTGACCTGCCCGCCCACCTCAAGGACCCCACCAGCATGGAGGAGCACGGCTTCTACCGCATCCTGGCCCGGTACAAGTTCATCCTGGCCTTCGAGAACGCGGTGTGCGAGGATTACATCACGGAGAAGCTGTGGCGGCCGCTGAAGCTGGGCGTGGTGCCGGTGTACTACGGCTCGCCCACGGTGGGCCGGTGGCTGCCCAGTGACCGGAGCGCCATCGTGGTGAACCCGGACGAGCCGCCGGTGAAACTGGCGAGGTACCTGAAGCGCCTCGACCAGAACGACCGGGAGTACGAAGCCTACCTGGAGTGGAAACGGCGGGGGGTCATCTCCAACCAGAAGCTGGTGACCGAGATGAGGGAGCGCCCCTGGGGGGTGCAGGACGTCTCCCAGGACAATTACATCGACGCCTTTGAGTGCATGGTGTGCAACCGGGTTTGGGAGAACATCGAGAGGCGGAGACAGGGTCGGGCCCCCAGGAGGTGGAAGGCCGAGGCGGATCACCTGAGCTGCCCTGGCCCCAGGACCTTCAGCGTCTCGGCAGGACCCACCAGGCTCAGCTCTCTCAGGGCCATCTGGAAGCCCAGCTTCGAGCAGTCGAAGAAGGAGGCGCGGGCGCTGAGGCGGCTGGTAGAGAGGAATCGCAACTTCACTGTGGAGGAATTTTGGAGAGTGGTATTTAATGAGTAAAGCCCCCCTGACAGACTACTGCCCTCCTCCCGACAGACGCCTGCTTGAGAAACTCATTTCTTTAGCTGCCAGaataaggtgtgtgtgtatatgtgtctgCAGAGATGTTTGTTCTGTGCTCTATGAACCACAAGGACagtttacaattattttgatcTTTTAAAAGACCCAGTCGAGTCAGTGCAGTTGTGAATGTGCGGTGACAGAGAGGCGATGTGCCCTGAATGAACGCTCGTGTGATCGGCAGAGCTGcactcatttttaaataacatagcAGTGTTCTGGATGcacagtaatagtaataataatgtaatatttgacAGCTAGGCCTGCTGTTACGAGGCCTTCGTGTGCACAGCTGCCTGAACGCGAGTAACAATCAGCCGCGTCGCCCGTCACGCTCGTATTACGGGGCCTTGTGTGCCGAGCTGAGTCGTGGGAGAAAAGCAAACATGTGAGCGAATGCGTTTGGACACGCTTGTCATACCCGTGaagaggtttgtgtgtgtgcacatgttaACAGAGGGACAGTATCGTTCTGTAGGACCACTTTGTTGCAGGatcctgttattttgtttttcacagataTCATGAATTTTGGAAACTGAACAGCGCTGTCATCGCCCGCAGGCTAGGCGATGGTCGTTGTTGTTAtgaggaaagaaaaggaaatgccaGTGTGAGGGAAATTTCCTGTTaaggaattattttaatttttttaattaaaagtttacCGATCTGTTAACGCTGTTACACAATGTTTGAATACAGTAACATTGAAATGTAGCATACATTTAGGGCAATTgtgaagtttgtttttcaatgtatattttctatacttttctATAATATAACAGCATAATGTTTgatcattcatgtttttataggTTATTACATGTTTTCTAATAAAGGGTTTAATACTGTATTGTATACTGTAAACAACAA

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG:

id description
K09669 FUT10; alpha-1,3-fucosyltransferase 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010643 True 2464 mRNA 0.54 4 38043745 38050947

Neighbor

gene id symbol gene type direction distance location
AMCG00010644 LOC108427269,LOC105894604 coding upstream 18416 38010059 ~ 38025329 (+)
AMCG00010641 LOC106571427 coding upstream 72065 37960752 ~ 37971680 (+)
AMCG00010636 NA coding upstream 170260 37865062 ~ 37873485 (+)
AMCG00010635 NA coding upstream 234498 37795529 ~ 37809247 (+)
AMCG00010634 ankrd55,LOC107578565 coding upstream 262643 37768779 ~ 37781102 (+)
AMCG00010650 NA coding downstream 226370 38277317 ~ 38278369 (+)
AMCG00010652 NA coding downstream 255307 38306254 ~ 38317804 (+)
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding downstream 274738 38325685 ~ 38339014 (+)
AMCG00010654 enoph1 coding downstream 324512 38375459 ~ 38378170 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding downstream 396356 38447303 ~ 38458936 (+)
G82156 NA non-coding upstream 217829 37825697 ~ 37825916 (+)
G82140 NA non-coding upstream 300014 37743525 ~ 37743731 (+)
G82092 NA non-coding upstream 382590 37658307 ~ 37661155 (+)
G82063 NA non-coding upstream 487144 37554453 ~ 37556601 (+)
G82057 NA non-coding upstream 510601 37526083 ~ 37533144 (+)
G82228 NA non-coding downstream 36446 38087393 ~ 38093714 (+)
G82229 NA non-coding downstream 44674 38095621 ~ 38095902 (+)
G82230 NA non-coding downstream 46079 38097026 ~ 38097286 (+)
G82231 NA non-coding downstream 59302 38110249 ~ 38110555 (+)
G82234 NA non-coding downstream 105450 38156397 ~ 38156598 (+)
G82192 NA other upstream 155582 37886220 ~ 37888163 (+)
G81987 NA other upstream 779696 37261324 ~ 37264049 (+)
G81971 NA other upstream 792576 37230428 ~ 37251169 (+)
AMCG00010585 NA other upstream 1949248 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 1963853 36077113 ~ 36079892 (+)
G82236 NA other downstream 118209 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 196074 38247021 ~ 38252010 (+)
AMCG00010655 NA other downstream 297331 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 316722 38367669 ~ 38372651 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 585529 38636476 ~ 38640125 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001888 fut10 coding NC_007121.7 CM002894.2 7255695 ~ 7264766 (+)