AMCG00010644 (LOC108427269,LOC105894604)


Basic Information

Item Value
gene id AMCG00010644
gene name LOC108427269,LOC105894604
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38010059 ~ 38025329 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010644
GACGAGGATGAGCTGAAGAAGTCCCTGTCCGAACTCGCGGACGACAAGGCCGACAACGCACACTCCAAGAGCATCAGCCGCATCGGCAGCGGCAGCAACCCGTTCCTCGACATCAGCCACGACCCCAACGCCGCCATCTACAAGACTGGCTTCCTCGCCAGGAAGATCCACGCCGACATGGACGGAAAGAAAACTCCCAGAGGAAAGCGGGGTTGGAAAACCTTTTATGCAGTTCTCAAGGGAATGATCCTTTACTTACAGAAGGACGAGTACAAGCCAGAGAAGGCCCTGTCTGACGAGGACCTGAAGAATGCGATCAGCGTTCATCACGCATTGGCCATCAAAGCCACGGACTACGAGAAGAGGCCCAACGTCCTGAAGCTCAAAACCGCCGATTGGAGAGTCTTCCTCTTCCAGGCCCAGAGCCCAGAGGAGATGGACTCGTGGATCCAGAAGGTGAACTCGGTGGCGGCCATGTTCTCCGCACCGTCCTTCCCCGCTGCCATCGGCTCCCAGAAGAAGTTCAGCCGCCCCCTGCTCCCCGCGACAACAACGAGGATGTCGAACGACGAGCAGCTGAAATCCCACGAGGCCAAGCTGAAGCACGTGTCCACGGAGCTGGCCGAGCACAGGTCCTACCCCCCCGACAAGAAGGTCAAAGCCAAGGAGATCGATGAGTACAGGCTGAAGGAGCACTACCTGGAGTTCGAGGAGAGTGACGGCGGCGGGCTGAAGAAGTCCCAGTCCAGCCCGTCGCTCAACCAGGAGTCCACGCCGGCCAACGTCAAGGTCAAGCGAAACATCTCGGAGAGGAAGGACTACAGGCCAGAGACGCCCAGTTCGAAGCAGAAGGTCACC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108427269 isoform X1

GO: NA

KEGG:

id description
K12494 PSD; PH and SEC7 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010644 True 858 mRNA 0.59 6 38010059 38025329

Neighbor

gene id symbol gene type direction distance location
AMCG00010641 LOC106571427 coding upstream 38379 37960752 ~ 37971680 (+)
AMCG00010636 NA coding upstream 136574 37865062 ~ 37873485 (+)
AMCG00010635 NA coding upstream 200812 37795529 ~ 37809247 (+)
AMCG00010634 ankrd55,LOC107578565 coding upstream 228957 37768779 ~ 37781102 (+)
AMCG00010626 NA coding upstream 515319 37482438 ~ 37494740 (+)
AMCG00010643 NA coding downstream 18416 38043745 ~ 38050947 (+)
AMCG00010650 NA coding downstream 251988 38277317 ~ 38278369 (+)
AMCG00010652 NA coding downstream 280925 38306254 ~ 38317804 (+)
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding downstream 300356 38325685 ~ 38339014 (+)
AMCG00010654 enoph1 coding downstream 350130 38375459 ~ 38378170 (+)
G82156 NA non-coding upstream 184143 37825697 ~ 37825916 (+)
G82140 NA non-coding upstream 266328 37743525 ~ 37743731 (+)
G82092 NA non-coding upstream 348904 37658307 ~ 37661155 (+)
G82063 NA non-coding upstream 453458 37554453 ~ 37556601 (+)
G82057 NA non-coding upstream 476915 37526083 ~ 37533144 (+)
G82228 NA non-coding downstream 62064 38087393 ~ 38093714 (+)
G82229 NA non-coding downstream 70292 38095621 ~ 38095902 (+)
G82230 NA non-coding downstream 71697 38097026 ~ 38097286 (+)
G82231 NA non-coding downstream 84920 38110249 ~ 38110555 (+)
G82234 NA non-coding downstream 131068 38156397 ~ 38156598 (+)
G82192 NA other upstream 121896 37886220 ~ 37888163 (+)
G81987 NA other upstream 746010 37261324 ~ 37264049 (+)
G81971 NA other upstream 758890 37230428 ~ 37251169 (+)
AMCG00010585 NA other upstream 1915562 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 1930167 36077113 ~ 36079892 (+)
G82236 NA other downstream 143827 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 221692 38247021 ~ 38252010 (+)
AMCG00010655 NA other downstream 322949 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 342340 38367669 ~ 38372651 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 611147 38636476 ~ 38640125 (+)

Expression


Co-expression Network