AMCG00010655


Basic Information

Item Value
gene id AMCG00010655
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38348278 ~ 38353962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010655
ATGATCTGCAGGCTGCGCTCCGTCCGTGCAGTATTAACAGCTGTGCAGATGTTGCACCAGAACGAGGCTGGTCGTGTTGGCGCGCAGACTGGACCGGAGACGCATAAAAAACGTCACAGCCGACGTAATTCAACATTCAACTATTATATCCTGTTTAACGATGGGATCTCGTATATCTGCGCCACAGAGCTGAGTTGCGACACACAGACCACCTTTGCTTTTCTGGATGAGGTCTGTAAGGTCTTTGTCAACAGCGCTCTGATAAAGGAAGTGGCCTTTGCCCAGCCCTTTGAGTTCAGCCGGGACCTGCAACCGGCGCTGGCCCAGTACATGGCTGATTATGGAGCACAAACTGGTTCGCAAAAGCTGGAGGACATACAAGTTCAAGTAAATGACGTGAAAGGGATTCTGAAAGATAACATAGACAAAGTCCtggacagaggagagaaactGGATGACCTGATCGACAAAACAGAAGACCTCCAGGCAACTGCCGACACGTTCCAAAAAACTGCCACAAGGGTTTCACGGAAGATGTGGTGGAAGAATACAAAGATGATCATTATTATCGTTGTGATTGTGGTGATAATCCTTATCCTCATTATTCTCCTGTCCACCAATGTAATCCCCACTTAATTCCTTCTCTGTCAAAGCACTTTCAAATATCTCCCCAATCAAAGGGGCCTTGTTTATATACCCaagtttttaattctgttcaaAAGCTAGTATCAGTGTACGAATAAACACAAATTCCATTAGCGTTCAGTGTGAAACTTATGACACAGATGCAACTGACGTGCTACACGCAAGTTTGAACAAATGTGGATGTTTGATCACTTAGTTTCCTTCCTTTATGGATGTTTGATCATTTTGTTCCCTTAAtgtatggttttgtttgttctcattcTTACATCTCTTGTAACGTTCCATcctgctttataaagtatattttttgtctgttttgtttttgcctcaTTTTGTTAAGTGCTGGCACCTGAGTTCAGTCACAGATGCATGTTGTAGCTTTGCTGTTCTGCCGTGTCATCGTTCACAttgtaatgaataataaacacGTTTCAC
>TU102627
ACGGTGTCTGCCTGTCTCTAATGGCGCCCTTTAGTGTATAACTGCCGGGACAGCGGTGCAGGGAAAGGAGACCGGCCTTTTCTTCCCTAATATGTTAATTTGTTGAGGTGTTGTCCTGTGAAACATTTACAAGTACTCTGATCCTCGTGAGCTGCTCTCTCTGAAGTCCCCTACAGTGCAGACATGGCTGATTATGGAGCACAAACTGGTTCGCAAAAGCTGGAGGACATACAAGTTCAAGTAAATGACGTGAAAGGGATTCTGAAAGATAACATAGACAAAGTCCtggacagaggagagaaactGGATGACCTGATCGACAAAACAGAAGACCTCCAGGCAACTGTGAGCATTTTAAGCCTACATTTTCCCTTGAACTAGAAATGAAATGCTGTGATGCTTTCCGGTACATCGAACAGCTCTGGCACCAGAGTTGGAAGTTGCAAGTTACACGCAATCTGAgacagttttgtttctgtgatcaaatcgtgtgtgtctgtgtttccaGTGACAAACTGTAATACGATGGTGTCTTTCCTCAGGCCGACACGTTCCAAAAAACTGCCACAAGGGTTTCACGGAAGATGTGGTGGAAGAATACAAAGATGATCATTATTATCGTTGTGATTGTGGTGATAATCCTTATCCTCATTATTCTCCTGTCCACCAATGTAATCCCCACTTAATTCCTTCTCTGTCAAAGCACTTTCAAATATCTCCCCAATCAAAGGGGCCTTGTTTATATACCCaagtttttaattctgttcaaAAGCTAGTATCAGTGTACGAATAAACACAAATTCCATTAGCGTTCAGTGTGAAACTTATGACACAGATGCAACTGACGTGCTACACGCAAGTTTGAACAAATGTGGATGTTTGATCACTTAGTTTCCTTCCTTTATGGATGTTTGATCATTTTGTTCCCTTAAtgtatggttttgtttgttctcattcTTACATCTCTTGTAACGTTCCATcctgctttataaagtatattt

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08513 VAMP4; vesicle-associated membrane protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010655 True 1080 mRNA 0.43 5 38348278 38353962
TU102627 False 1001 lncRNA 0.42 2 38352219 38353833

Neighbor

gene id symbol gene type direction distance location
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding upstream 9264 38325685 ~ 38339014 (+)
AMCG00010652 NA coding upstream 30474 38306254 ~ 38317804 (+)
AMCG00010650 NA coding upstream 69909 38277317 ~ 38278369 (+)
AMCG00010643 NA coding upstream 297331 38043745 ~ 38050947 (+)
AMCG00010644 LOC108427269,LOC105894604 coding upstream 322949 38010059 ~ 38025329 (+)
AMCG00010654 enoph1 coding downstream 21497 38375459 ~ 38378170 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding downstream 93341 38447303 ~ 38458936 (+)
AMCG00010661 NA coding downstream 114410 38468372 ~ 38474161 (+)
AMCG00010670 NA coding downstream 130159 38484121 ~ 38487527 (+)
AMCG00010671 NA coding downstream 133727 38487689 ~ 38488286 (+)
G82250 NA non-coding upstream 60750 38285579 ~ 38287528 (+)
G82234 NA non-coding upstream 191680 38156397 ~ 38156598 (+)
G82231 NA non-coding upstream 237723 38110249 ~ 38110555 (+)
G82230 NA non-coding upstream 250992 38097026 ~ 38097286 (+)
G82229 NA non-coding upstream 252376 38095621 ~ 38095902 (+)
G82285 NA non-coding downstream 69518 38423480 ~ 38425049 (+)
G82338 NA non-coding downstream 120888 38474850 ~ 38475108 (+)
G82339 NA non-coding downstream 123257 38477219 ~ 38483324 (+)
G82353 NA non-coding downstream 204504 38558466 ~ 38564283 (+)
G82468 NA non-coding downstream 673122 39027084 ~ 39027418 (+)
AMCG00010648 NA other upstream 96268 38247021 ~ 38252010 (+)
G82236 NA other upstream 178747 38169156 ~ 38169531 (+)
G82192 NA other upstream 460115 37886220 ~ 37888163 (+)
G81987 NA other upstream 1084229 37261324 ~ 37264049 (+)
G81971 NA other upstream 1097109 37230428 ~ 37251169 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 13707 38367669 ~ 38372651 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 282514 38636476 ~ 38640125 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 428117 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 888895 39242857 ~ 39248625 (+)
G82671 NA other downstream 1494984 39848946 ~ 39849369 (+)

Expression


Co-expression Network