AMCG00010656 (hnrnpdl,hnrpdl,LOC106562358,LOC107653490)


Basic Information

Item Value
gene id AMCG00010656
gene name hnrnpdl,hnrpdl,LOC106562358,LOC107653490
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38367669 ~ 38372651 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010656
ATGGCTGACGAAGGGGCGGAGCCACTGCgcgacttgttttttttatatgagtCCCTTGGTTCTCTGTCAGCCAATCGGCGCAGCGCCAGGGCCACCCTGACTCACGTCACAGCTCTGGCAGCCAATCGGCGCGGCACTAGTGCCACCCTGCAGTACGTCACAGCCCTGGCAGCCAATCAGTGCGGCGCAATGGCCACCCTGAAACGCGTCACAGTGCTCACGTCGCACCGGAGGGTCGGCCGAGCACACGTGAAGTCCATTATTGGAAGACTGTCCTCTCCGCGGCAGAGGCGGCGTTGTCAAAAGGGTTTATTGTTCCCCGGAAAGATGGCTCAGGTGGCAATGCCGGCCAGCACCAGGGCACTGTTGTTAGACATAGAAGGAACCACAACGCCGATCACATTTGTCAAGCATGTGTGCTTTAGTTTGTGCAGCGCGGGTCATCCCGTCCTGCCGGGCCAGGGAGCAGCACCGGGTCTGATCCTCGCAGCAATGCAGGAACGAGACAAGAGGAAGCCTGTTGATGGACAGGACTGTGCCTTTGCAGGGTAG
>TU102651
CACCAGGCATGCATCAAAATCTGGTGTCAGACAGGCAGCTGAAGTCTAGTATCTGATGAACAGTACTCACATCTCCAAATCTTCCAAAGTAGTCCCGGATCTGATCTTCTGAAGTCTCTGGGCTCAGGCCGCCCACGAACACTTTCTTGGGGGGTTCTTTGCCCTTCATTGCTTTGGCTCTCTTGGGGTCAATCAGTTTCCCGTCCAGCTTGTGTTCTTTTAGCTCTAATACCCTGTCCACGCTGTCAGCGTCTTTGAAGAGGACGAACCCAAAGCCCCGGGACCGCCCCGTCATGGGGTCGGTTTTAATAGTGCAGTCCAGCACCTCCCCGAACCTCGACAGGTAGTCTGTAAGGTCCTTCTTGCTTGTGTCCCAGCTGAGCCCACCAATAAACATTTTCCTACCGTCGTCCTGCTGGTTCTTGCTGGCGTTGATCTTGGAGCCCTCGGGAAACTCCTCCATGCTGAAGTCAACCTGTCCTTCAGTCTCCATCTTCTTGGCGATCTGTAGCTGCGCGTCGGTGATCTGAGCGAGAGATGGCGGCGTGTTTGTCTCCTGTCGACCCGAGAAGTTGGCACGGTGAACTGTAAACCGATACCGCCGCGTTGTGTAAAATGGCTGACGAAGGGGCGG

Function

symbol description
hnrnpdl Predicted to enable poly(A) binding activity and poly(G) binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010656 False 552 mRNA 0.59 3 38370024 38372651
TU102651 True 634 lncRNA 0.54 3 38367669 38370042

Neighbor

gene id symbol gene type direction distance location
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding upstream 28655 38325685 ~ 38339014 (+)
AMCG00010652 NA coding upstream 49865 38306254 ~ 38317804 (+)
AMCG00010650 NA coding upstream 89300 38277317 ~ 38278369 (+)
AMCG00010643 NA coding upstream 316722 38043745 ~ 38050947 (+)
AMCG00010644 LOC108427269,LOC105894604 coding upstream 342340 38010059 ~ 38025329 (+)
AMCG00010654 enoph1 coding downstream 2808 38375459 ~ 38378170 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding downstream 74652 38447303 ~ 38458936 (+)
AMCG00010661 NA coding downstream 95721 38468372 ~ 38474161 (+)
AMCG00010670 NA coding downstream 111470 38484121 ~ 38487527 (+)
AMCG00010671 NA coding downstream 115038 38487689 ~ 38488286 (+)
G82250 NA non-coding upstream 80141 38285579 ~ 38287528 (+)
G82234 NA non-coding upstream 211071 38156397 ~ 38156598 (+)
G82231 NA non-coding upstream 257114 38110249 ~ 38110555 (+)
G82230 NA non-coding upstream 270383 38097026 ~ 38097286 (+)
G82229 NA non-coding upstream 271767 38095621 ~ 38095902 (+)
G82285 NA non-coding downstream 50829 38423480 ~ 38425049 (+)
G82338 NA non-coding downstream 102199 38474850 ~ 38475108 (+)
G82339 NA non-coding downstream 104568 38477219 ~ 38483324 (+)
G82353 NA non-coding downstream 185815 38558466 ~ 38564283 (+)
G82468 NA non-coding downstream 654433 39027084 ~ 39027418 (+)
AMCG00010655 NA other upstream 13707 38348278 ~ 38353962 (+)
AMCG00010648 NA other upstream 115659 38247021 ~ 38252010 (+)
G82236 NA other upstream 198138 38169156 ~ 38169531 (+)
G82192 NA other upstream 479506 37886220 ~ 37888163 (+)
G81987 NA other upstream 1103620 37261324 ~ 37264049 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 263825 38636476 ~ 38640125 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 409428 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 870206 39242857 ~ 39248625 (+)
G82671 NA other downstream 1476295 39848946 ~ 39849369 (+)
G82723 NA other downstream 1674435 40047086 ~ 40049815 (+)

Expression


Co-expression Network