AMCG00010673 (trappc13,LOC107667267)


Basic Information

Item Value
gene id AMCG00010673
gene name trappc13,LOC107667267
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38652885 ~ 38661453 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010673
ATGGATGTCGTCCTGCATTATAAGAACCAGCAAGGTCCTTTACAGGATTTAATAGCAGTAGCCGAGAAAGCCCTGGAAGATTTTCCCTGTGCCCCTTTGCCCAGATTTACCCCGTGGTACCCCACCGACAGCACCCTGCCTCTGACACCCAGAAAGCGGCCTCCGGTTATTTTGCCTGAAGAGGCGGAACGGATCGAGGGTGGCCTGTGTTCTTCACAGCCCTTGGTGGCCTCTCAGGGCTACGACTGCACGGTGGGCCTGCTGGAGTTCTGCACCCGTCCCGGCAGGGCGAGGACCCTGCAGCGGGCATCGTCTCTGCAAGCAGGACCGACACGGTGCCAGGACAGCGCttcagagggagggagagggttcAGGAGGTCGTGGAGCGTCTCTGTTCCTGGCAGGATGCTCGGCCAGGAAATCCATCCTCTCTCCGGGCCACTCCGGGGTGTGGTGGAGGGTCTCGGCCTGCACTCGCTGCAGAGGGCAAAGTGGGTCATCGAGGAGTCCAACTGCAGCAGGGTGCGTCTGGAGCACACCTGGGAGGCGCTGAGCAGAGCGATGAGGCGATGCATGCTGCCCTCCTGCCACGCTAATATCCAGAGGGACACCGGCCAAATATGGGTGTTCTGTGACATTGTGTACTTGATGCGGTTGACCAAGCCGACTCTCTTCACCAACATGCCGGTGACATGCGAGGACCGGGATCTGCCAGGTGACCTCTTCAGCCGGTTGATGAAGGAAGACCCGTCCACCATAAAGGGGGCAGAGACTCTCATGCTGGGGGAGATGCTGACGCTTCCTCAAAACTTCGGGAACATTTTCCTGGGGGAGACCTTCTCCAGTTACATCAGCGTGCACAACGACAGCACGCAGGTGGTGAAGGACATCCTGGTGAAGGCTGACCTGCAGACCAGCTCCCAGCGACTGAACCTCTCTGCGTCCAACTCGGCCGTGGCGGACCTGAAGCCGGAGTGCTGCATCGACGACGTCATCCACCACGAGGTCAAGGAGATCGGCACGCACATTTTGGTCTGTGCAGTCAGTTACACGACCCAGACCGGGGAGAAGTTATACTTCAGAAAGTTCTTCAAATTTCAGCCCGAGAAACCTGCTTTCAGCCTGCACTCTCTCTTCAACCAGGTGCTGAAGCCGCTGGACGTGAAGACCAAGTTTTACAATGCTGAGACGGACGAGGTGTTCCTGGAGGCCCAGATCCAGAACATCACCACCTCCCCCATGTTCATGGAGAAGGTGTCCCTAGAGCCGTCCATCATGTACAACGTGACCGAGCTCAACACCGTGTTCTCCACCTTTGGAAAGATGTCCTACCTGCAGCCCATGGACACACGCCAGTACCTGTACTGCCTGAAGCCCAAGCCCGAGTTCGCGGAGAAGGCAGGGGTGATCAAGGGAGTCACGGTCATCGGCAAACTGGACATCGTGTGGAAGACCAACCTGGGCGAGAGGGGGCGGCTGCAGACCAGCCAGCTCCAGAGGATGGCTCCCGGCTACGGTGATGTGAGGCTCTCCCTGGAGCTCATACCCGACACGGTGCATTTAGAGGAGCCGTTCGACATCACCTGTAAAATAACGAACTGCAGTGAGAGGACCATGGACCTGGTTCTGGAGATGTGCAACACCAGCTCCATACACTGGTGCGGCGTCTCGGGCAGACAGCTGGGCAAGTTGAGCCCCAGCTCCTCTTTGTACCTCACCCTCAAACTCCTGGCTTCAGTCCAGGGCCTGCAGAGTATATCTGGGTTGCGGCTCACGGACACATTCCTGAAGAGGACCTACGAGTACGACGACATCGCCCAGGTGTGCGTCGTCAGCTCCTACTTGGACCCGGAGAGCTAA

Function

symbol description
trappc13 Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13).

NR:

description
PREDICTED: trafficking protein particle complex subunit 13 isoform X3

GO: NA

KEGG:

id description
K20310 TRAPPC13; trafficking protein particle complex subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010673 True 1860 mRNA 0.58 12 38652885 38661453

Neighbor

gene id symbol gene type direction distance location
AMCG00010672 ppwd1 coding upstream 18940 38631804 ~ 38633945 (+)
AMCG00010669 NA coding upstream 118075 38515937 ~ 38534810 (+)
AMCG00010671 NA coding upstream 164599 38487689 ~ 38488286 (+)
AMCG00010670 NA coding upstream 165358 38484121 ~ 38487527 (+)
AMCG00010661 NA coding upstream 178724 38468372 ~ 38474161 (+)
AMCG00010684 NA coding downstream 10744 38672197 ~ 38673526 (+)
AMCG00010675 NA coding downstream 10771 38672224 ~ 38675740 (+)
AMCG00010674 NA coding downstream 18355 38679808 ~ 38684359 (+)
AMCG00010685 NA coding downstream 76996 38738449 ~ 38777045 (+)
AMCG00010686 NA coding downstream 206345 38867798 ~ 38880138 (+)
G82353 NA non-coding upstream 88602 38558466 ~ 38564283 (+)
G82339 NA non-coding upstream 169561 38477219 ~ 38483324 (+)
G82338 NA non-coding upstream 177777 38474850 ~ 38475108 (+)
G82285 NA non-coding upstream 227836 38423480 ~ 38425049 (+)
G82250 NA non-coding upstream 365357 38285579 ~ 38287528 (+)
G82468 NA non-coding downstream 365631 39027084 ~ 39027418 (+)
G82488 NA non-coding downstream 441467 39102920 ~ 39103266 (+)
G82495 NA non-coding downstream 490354 39151807 ~ 39152153 (+)
G82520 NA non-coding downstream 555374 39216827 ~ 39217078 (+)
G82521 NA non-coding downstream 558466 39219919 ~ 39220207 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other upstream 12760 38636476 ~ 38640125 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other upstream 280234 38367669 ~ 38372651 (+)
AMCG00010655 NA other upstream 298923 38348278 ~ 38353962 (+)
AMCG00010648 NA other upstream 400875 38247021 ~ 38252010 (+)
G82236 NA other upstream 483354 38169156 ~ 38169531 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 120626 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 581404 39242857 ~ 39248625 (+)
G82671 NA other downstream 1187493 39848946 ~ 39849369 (+)
G82723 NA other downstream 1385633 40047086 ~ 40049815 (+)
AMCG00010735 clg14h18orf25 other downstream 1890914 40552367 ~ 40566357 (+)

Expression


Co-expression Network