AMCG00010693 (slc30a5,LOC102789045)


Basic Information

Item Value
gene id AMCG00010693
gene name slc30a5,LOC102789045
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39157937 ~ 39167571 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010693
CCGGCTGCTTGTGTCGTTGTGGCCGGTAGAGGCCGCTGCAGCTGCGCCGTGAACCTGCCTTTGCACCGGGAGGCAGGAATACGGGTTCCTGGAcgactttaaaattaaattaaataaagacgaGCTTAAGGATGTTAAATATAAACACGTTATTATTGACTCGAGCGACTGAATAACCGATTTTGGTGCGTATTATCGAGGTCGATGCAGGCGGTTTCACTTTTACGTTAAAAACTGCAGTTTGACGTGGCTTAGTGCCGGCGCGCCGCGGTGCAGGAGCGACCCGACACCATTTTCCGGCCGCCTCCAGATGACTCCCGAGCGGCCGGCTCATCTACTGCGGCCCCCGGCTGCGGGCCTACCGGTCGGACCTTAGGCGGCTAAGTGCGATCGTTTTAGTTTGTAACAACGAAACAAGATCATGTGTACACTGTGCTGATAAGGACCCAAAAGTGCACTTTCGTAAAAGTATTACGGTAGTTTACTAGTTCATTACATGATGAGACGTCACTcatgtgaagtgtttttttattcgCTTTAACCTATTATTTAttcaacttaaaaaacaaaccaacagtaTCATTATGGATGACAAATACAGCAGCAATGTGATTTCCAGTGGCCAGCTGGGACCGGTGGAGGTGCCCAATGCGAGGCTTACCAGGTACATCGTGTTACTGTGCGTCACCAAGGTGTTGAAGGCGCTGGGCATGTTTGAGTCCTACGACCTCCTTAAAGTCGTCCACATCGTGCAGTTCATCTTCATTCTGAAACTGGGATCTGCCCTGTTCCTGGTCTTCTTCCAGAAGCCGTTTTCAGCCGGAAAGACCATTTCAAAGCGACAGTGGATCAAAATCCTAAAACACGCAGTCGTCGGCTGTATTATTTCACTCCTGGGCTTTTTCGGTCTCACACTCTGTGGACCTTTAAGAACCCTGCTGCTCTTCGAACACAGCGATATCGTGATCGTCTCTCTGCTCAGCGTCCTCTTCACCAGCTCTGGAGGTGGACCATCCAAGACCAGAGGGGCGGCTTTCTTCGTCATCGCAGTGATCTGTTTGCTGCTCTTCGACAACGACGACCTCATGGCCAAGATGGCGGAGCACCCTGAGGGACACCACGACAGCGCACTGACGCACGCTCTCTACACGGCCATCGCGTTCCTGGGCGTCGCGGATCACAAGGGTGGCGTCGTGCTGCTGGTGATCTCCTTGTTCTTCATGGTGGGCTTCCACACGGCCTCCAGGAAGCTGTCTGTGGAGATCGGGGGGGCCAAGCGCCTGTACTGTCTGTCGAACCTGGTCTCGGCCGCCGTCCTGCTGCCCTGGGTCATCGTGCTGTCGGCCACCACCGAGGTGAGCGGTTGTTACGAGCTTGAGTGTCGGGACTTGGACTGTTCCATCAGCACGGCGGGGGGGTGTTGGAAGAGAACTATAACCCATCGCCGAAGGAGGTTTGGTCAGAGAAAAGTGAGCCGTTCACTTCTCTGGCTAGAACACTCTCGGTATGAGGGAGACCGAACCCCAAACCCCTGTCTTCTCACGTCTGTCTCCATTGCTTCCGTCCAGAGCAAAGTGGAGTCCTGGTCGGCGCTTGTCCTGCCCTTTGCGATGGTCGTGTTCTCCGTCATGATCCTGGACTTCTACGTGGATTCCATCTGCATCGCCAAGATGGAGGCCCCCAAGTGCGCCCGCTACGGCTCGCTCTTCCTGGTCTCCAGCGGCCTGCTGCTGGCCAACTTCTGGACGCACCCCTTCACAGACACGCTGCGCTCCGTCGGCACGGCGGCCCTGCAGGACGGCACCGAGCACGTGCTCTCGGGGGGCGTGGTGGTCAGCGCCCTGTTCTTCATCTTGTCTGCCAATATTTTGTCATCCCCCTCCAAGAAGGGGCAGAAAGGCACGCTGGTGGGCTACTCTCCCGAGGGGACACCGCTCTACAACTTCATGGGTGACGCCCTGCAGCACACATCGCACTCGCTCCCCCGCTTCATCAAGGACTCTCTGAAGCAGATCCTCGAGGAGTACGACTCCAGGCAGATCTTCTACTTCCTCTGTCTGAACCTGGCATTCACCTTCGTGGAGCTGTTCTACGGCGTCTGGACCAACAGCTTGGGCCTCATCTCGGACGGCTTCCACATGCTGTTCGACTGCTCCGCCCTGGTCCTCGGCCTCTTCGCCGCCCTGATGACCAGGTGGAAAGCGACGCGCATCTTCTCCTATGGGTACGGCCGGGTTGAGATCCTCTCCGGGTTCATCAACGGCCTGTTCCTCATGGTCATCGCCTTCTTCGTCTTTGTGGAATCGATCACGCGGCTCGTAGACCCTCCCAACATCAACACGGACATGTTGACTCCGGTGTCCGTCGGGGGTCTCATCGTGAATCTGATTGGCATCTGCGCCTTCAGCCACGCCCACGCGCACGGAGCGGCCAAGGGGAACTGCTCCTCCAACGACCACGGCCACTCCCACCACGGGCATGGCCACGGGGACCACGGGCACGGACACGGACACGGGGGACACGGACACGCACACGGGAGCCACGGGCACGGCCACTCGCACGGCACTGGGGGAGGCATGAACGCCAACATGAGGGGCGTCTTCCTGCACGTCCTGGCCGACACGCTGGGCAGCGTGGGCGTCATCATCTCCACGGTGCTGATCCGCCAGTTCGGGTGGCTGATCGCCGACCCCATCTGCTCACTCTTCATCGCCGTGCTGATCTTCCTCAGTGTCATCACCCTGCTGAAGGACGCCTGCGAGGTGCTGCTGCTGAGGATCCCCCCCGAGCACGAGAAGGAGCTCAGCCATGCCCTGGAGAAGCTGATGTCTGATGTTGTGGAGCAGAGAATCATCCAGCAGGTGACCGCTGTGCTGAAAGACGCCGGAGTCAACAACCTGTCCGTGCAGGTGGAGAAGGAGGCCTACTTCCAGCACATGTCCGGCCTCAGCTCAGGTTTCCAGGAGGTTCTCGCCATGACGAAGCAAATGGAGTCCATCAAGTACCTGAAGGACGGGACGTGTATCATGTGAGCCGGACACTACAGGACCAAATCGAATGGCACGACTCGTGTGatgaaaactgaagaaaaagtgGATTTGGGGAAAGTGTTTATAACGTGGTCTGTGTCTTATTTTTgcacacaatgtacagtaatataatatatgcaaaTGATGACATAGCGTCTAGGAACCTTCTGTCTCCAAACGGGATATTATATTCCATGGTTAGAAATGGGTGATATCAGAGATCTGTACATCAGTCCATGCATTAAATCGTGATTGATTGCTGCTGTTGCattaaagttgtttttcattataGCGCCTGTGTTTCTACACACCTTTCTGAGAAATCGGCCTTGATCTTCTTACCCAGTTTATTGTCTGTTTTAAGAAGTTCCCGacagaatgtgtttatttccacTAAAACCAGATCAAGCAGTATTCTGTAGTAACAGTCGAGAAACCCGATCCTCTCCGGGCCGGAGGAGGGGCTGAAAATGAGACCGTTTTCCCAGAAGGAAGAGTATTGTGAAGCTGCTTTATGTGACTGGTTTGTTCCAGACTCCCATAATCCTCTGTGTCAGGAAGTGAGTCCTGTTTATAAAGATGCACATCAGTCACTCTGCCTTTTATGAGAGTACCAcaacccattaaaaaaaaaaacgcattacatacagtacaaataaaCTGCGGT

Function

symbol description
slc30a5 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within response to zinc ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC30A5 (solute carrier family 30 member 5).

NR:

description
PREDICTED: zinc transporter 5

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14692 SLC30A5_7, ZNT5_7, MTP, MSC2; solute carrier family 30 (zinc transporter), member 5/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010693 True 3696 mRNA 0.54 15 39157937 39167571

Neighbor

gene id symbol gene type direction distance location
AMCG00010692 LOC104930938,LOC103371488,LOC107738919 coding upstream 70684 39075665 ~ 39087253 (+)
AMCG00010690 NA coding upstream 174126 38978680 ~ 38983811 (+)
AMCG00010689 NA coding upstream 195076 38934343 ~ 38962861 (+)
AMCG00010686 NA coding upstream 277799 38867798 ~ 38880138 (+)
AMCG00010685 NA coding upstream 380892 38738449 ~ 38777045 (+)
AMCG00010694 NA coding downstream 1550 39169121 ~ 39171541 (+)
AMCG00010696 LOC107661783 coding downstream 145534 39313105 ~ 39333836 (+)
AMCG00010705 NA coding downstream 244945 39412516 ~ 39435225 (+)
AMCG00010706 NA coding downstream 268467 39436038 ~ 39444075 (+)
AMCG00010700 man2a1 coding downstream 288766 39456337 ~ 39463494 (+)
G82495 NA non-coding upstream 5784 39151807 ~ 39152153 (+)
G82488 NA non-coding upstream 54671 39102920 ~ 39103266 (+)
G82468 NA non-coding upstream 130519 39027084 ~ 39027418 (+)
G82353 NA non-coding upstream 593654 38558466 ~ 38564283 (+)
G82339 NA non-coding upstream 674613 38477219 ~ 38483324 (+)
G82520 NA non-coding downstream 49256 39216827 ~ 39217078 (+)
G82521 NA non-coding downstream 52348 39219919 ~ 39220207 (+)
G82523 NA non-coding downstream 68254 39235825 ~ 39238488 (+)
G82545 NA non-coding downstream 139358 39306929 ~ 39307154 (+)
G82548 NA non-coding downstream 204127 39371698 ~ 39374063 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other upstream 360051 38782079 ~ 38797886 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other upstream 517812 38636476 ~ 38640125 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other upstream 785286 38367669 ~ 38372651 (+)
AMCG00010655 NA other upstream 803975 38348278 ~ 38353962 (+)
AMCG00010648 NA other upstream 905927 38247021 ~ 38252010 (+)
AMCG00010695 NA other downstream 75286 39242857 ~ 39248625 (+)
G82671 NA other downstream 681375 39848946 ~ 39849369 (+)
G82723 NA other downstream 879515 40047086 ~ 40049815 (+)
AMCG00010735 clg14h18orf25 other downstream 1384796 40552367 ~ 40566357 (+)
AMCG00010738 NA other downstream 1409175 40576746 ~ 40586122 (+)

Expression


Co-expression Network