G80217


Basic Information

Item Value
gene id G80217
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27203001 ~ 27203201 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100050
GCctattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacgcctttctatcagaaccagcattaactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100050 True 201 lncRNA 0.55 1 27203001 27203201

Neighbor

gene id symbol gene type direction distance location
AMCG00010378 NA coding upstream 281126 26917897 ~ 26921875 (+)
AMCG00010374 plppr1,LOC107653496,LOC107702599,LOC107710008,LOC107750956 coding upstream 451065 26747568 ~ 26751936 (+)
AMCG00010377 NA coding upstream 467483 26735297 ~ 26735518 (+)
AMCG00010372 NA coding upstream 564773 26622349 ~ 26638228 (+)
AMCG00010368 NA coding upstream 837940 26363239 ~ 26365061 (+)
AMCG00010380 NA coding downstream 61584 27264785 ~ 27277753 (+)
AMCG00010382 epha5,LOC108428864,LOC107709147,LOC107702602 coding downstream 257841 27461042 ~ 27466622 (+)
AMCG00010381 NA coding downstream 305654 27508855 ~ 27509833 (+)
AMCG00010379 epha5,LOC108428864,LOC107567057,LOC107702602 coding downstream 322319 27525520 ~ 27548008 (+)
AMCG00010385 lpar1,LOC106568607,LOC107554848,LOC106572527 coding downstream 507412 27710613 ~ 27723371 (+)
G80210 NA non-coding upstream 124497 27078289 ~ 27078504 (+)
G80208 NA non-coding upstream 286162 26916541 ~ 26916839 (+)
G80207 NA non-coding upstream 286866 26915734 ~ 26916135 (+)
G80163 NA non-coding upstream 700727 26497769 ~ 26502274 (+)
G80140 NA non-coding upstream 793388 26404606 ~ 26409613 (+)
G80235 NA non-coding downstream 85378 27288579 ~ 27288856 (+)
G80264 NA non-coding downstream 592309 27795510 ~ 27796290 (+)
G80331 naa35 non-coding downstream 732965 27936166 ~ 27937054 (+)
G80362 NA non-coding downstream 818273 28021474 ~ 28021684 (+)
G80392 NA non-coding downstream 1003120 28206321 ~ 28207268 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 799981 26380467 ~ 26403020 (+)
G80014 NA other upstream 1176698 26012484 ~ 26026303 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other upstream 1206587 25992558 ~ 25996414 (+)
AMCG00010333 NA other upstream 2365449 24833071 ~ 24837552 (+)
AMCG00010320 LOC104946060 other upstream 3193148 23920760 ~ 24009853 (+)
G80249 NA other downstream 353214 27556415 ~ 27557007 (+)
AMCG00010393 isca1,LOC107662049 other downstream 666238 27869439 ~ 27874931 (+)
G80326 NA other downstream 703296 27906497 ~ 27906829 (+)
AMCG00010407 NA other downstream 1039788 28242989 ~ 28265443 (+)
AMCG00010431 NA other downstream 2291362 29494563 ~ 29503523 (+)

Expression


Co-expression Network