G80469


Basic Information

Item Value
gene id G80469
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28771227 ~ 28775463 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100365
GTAATTCCAtagatgtttttaataaatttagACACAGACtagaaaaaacagacaaaatgcatgttgtattaaagaaacaatttaaCACCTAGCAAcaggtagttttttttttgtttttttttgttttttagcgtacacatttttaaatttatttataaaatagtaTCTCGACCAACTATTCAATACCAAAGCATAACCAGGAGTTCCTACTGAATAAATTTTGCCGTTTCATTGTTACACACAGTAGAAAACCTTGGATGAACAGAGCAATGCAGTCTAAAAATGTCTTCAGGTAACAATAAAATTGGTCAAAGTTAGGTATGATGTTGTGGATAGTCACACATTGACAGGCATATGCAGAATCTTTAACaagacatatttaattatttagcagattacattttttgtttttacttaaaagATTATGcaaaaaaagtaacaaacatTTTTTCCTCTGTACACCTATTAAATTGAATGGCTATGCACAACTGATAACAATGCTTGTTTAGTTGCTTAGTGCTCTAGGTagttaacaaatataaattatttttaatgaaagagtatttatattgtatgtcCCATTTACACAGAACTCTTTCTAGtccaattaaaattgaaataacttTCCCTGATTCTAAAAAGTTATTTACGAAGAATGGGGTCTAAAATGTTTCAGGGTGTTGTCAAGAGGGAacagtgtttattaaaaataaataaaaaaaatgaataaggCAAGATTTGAGAGAGAATATAAAACTATCCTCTTGAGGGGAGAGAATTACACAGCTTCACTGATACATTACAATTTGGATAAATAAATGGCACTAGTGGATAAGCTGATATTGTCTAAATACACTGGAAAAGTGGTGGCACTTGAAATGGATGTAACCCTGTTTAAAAGACAATAGTGCTGAGCAATTAATCAGAATGTGATCTGCATTAGGATCAATGTCAAAATCAAAAATGCTTGAAActtatatttcaattacattgtGAATAGGAACTGTGAGCAAACAAAGGAAAGTACCAATGTTCATGGCAGCATTGGACTTAAAAGTAAAGCTAATGCCTCATCTATAGGTTGCCCTCCAAGCAATATACTATTTTTAATAGCTTGGACAGCTGGTGCATAAGTAAAAGtgtatcatttaaattaaatgcaattcttCTGTTCATTGGTGTAATATTATTGTCATACAACTAAAGTAGTTTAAAACTTATAGATTttaaatagtaatattaatattgcttaATTGGCATTGGcttctcataaaaaaaatatatgtattgtattttttatatataaaaatattaaaatctatgATGAATATTTCTTAACATAATTATCAATTATCAATCATCATgataataatgcaaaatcatTAATTGCTCAGCAATGTCTGGTGCAGAGCCATGCCACTGAACAGAGAGTTCTCCTCACAGGATTCTCCAACACAATTTCGTGCATATTTGGAGACCACTCTCTGTTTCCCTAATCTTTTAATTGTCTTTTCCACCCATCTGTTTTGCTTCAGttcttttctttcccaaacAGATGATGCCATGCATGTTATATCCAATAGTGTATTCTACATATTTGTTAAATTTCTTGCAAGCATCTTTGAGACATAAGACTTAACCTCATTGCTTTGTATTTGCACAAAAAGTCTGtatgttattttcaaatgagGAACATCAATAGATTAGTATGGTTTTCACTTCTTAGCTGCAAGCTGTGCTAGACTTTTTGTACATAGGCAACTGGGCCCAGATGGGATTAAAATCATTGCAcaaatttgtgtatatatatatatatatagtattcacCATATGTGTTCGAGTTTATAAATTATAGAGATGTTTTTATTCACATAATGACCAAAGAGCTTGCAAAATTCTCATCCATGTATTAGAACTGAATGCTAAATACTGCAAAATGTTAATTActattatcaataataaacaatacaatgactTTGATCACTGCCCCAGGTCTCTATAGCCCCTTGTTGCCCCTGCTGCCATGTTAATAACCAGTTTTTACTATTTCAAAAATGAAGCTCGAATTTAATCACAAACCAATAACTCTGAAATCAGACAATctgcaaaaatgtattgcagtgcCATTTCATATATCACTGCAAATTGTtgcaaaaaaagaataaataaaaaaagaaaaacagctacTGTTGCATCAGAACTATATACATGACAAGTTTTAGTATCAAAATCCTTCAACATTGCAATATTCTCCAAAGCTTTTCATGACACAAAACACCAAGAACTCAGAATAAAGTTGTCTACCACTTCTGGAACTCAAGTAGACAAGTCTATTGTAAACTGGATATTGTGGCTCTATATTCTAATAGCAAATGGAGAACACCTAAaccaatacaatatattattaccTATATTAATGGTTTGATCTATAGCAGCAAAGGCACTGTACATCAGCAGATCCACAGACTTGGTTCTTGTAAGCATTCAATGCACAGACTgtccaaaagaaaagaaaaatgttatttacatataaCTGGCAAAGAATAAGCGTGTCTTTTGGAAAGAACTCCAATGCACATCCCAAAACATATTGGCCAACAATCCATGACAGGAGGACATAGGCATTTATCTTGTTATCTTCATTGACTTCTGTAATCCTGAAGCTGGAGAACAATTGGGTTGTGGGTAGTTGCCGGAGTTCCATGGGCATCAGtgtaatacaaaaaagcaaTCGATCGGCGTGCCTTTCCTCCTGCTTACACTGCATTGTCCATGCTCTTTAATAACTGGAATGTAATCCAAATGGGCATTGCTGTATAAATATTTGGCTTTTGCAAGAGAACAGCATTTCCTGCCAATGGCTGGAGATAATACCACCCTTCTGCAAACTTCCATGTCAACTTATGTGTCAAGCAGCTGCATCCAATTCCATTTAAACATTGGTTAGAAAAtctccttaaaaataaatagcttaaaTCTACTGTACAGAGTCAATGTGTTTGCTTCATGGAGCGTAagcttggtttgttttattagtcATTTCTGCTTTGAAGATTTGGTATCAAGTGTTAACTGTACATCCATAATATAGTAGTAAAATACGTCAGAGTTGATGTGGTGGattcttgtttttatacaaattcTTGTTTCCGAAAGTCCAGTCTTAAAGAACAAATAGAACAAAGTGCTTCAGCAGGAGTCCTCTTTGTATTCAAATCCTTTATCTAATAAATAACTTCATAGACTGTGGCCTTCTTGTCCCCAGAGCCTGTGACAATATATTTATCATCCACAGAGATGTCACAGCTGAGCACAGAAGAGGATTCCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100365 True 3331 lncRNA 0.33 3 28771227 28775463

Neighbor

gene id symbol gene type direction distance location
AMCG00010414 tle1 coding upstream 188302 28561146 ~ 28582925 (+)
AMCG00010411 rasef,LOC106580191 coding upstream 371836 28396667 ~ 28399391 (+)
AMCG00010410 NA coding upstream 382058 28376842 ~ 28389169 (+)
AMCG00010409 NA coding upstream 399595 28339880 ~ 28371632 (+)
AMCG00010408 NA coding upstream 436351 28303292 ~ 28334876 (+)
AMCG00010424 gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278 coding downstream 272723 29048186 ~ 29060040 (+)
AMCG00010423 NA coding downstream 319874 29095337 ~ 29107346 (+)
AMCG00010421 NA coding downstream 447853 29223316 ~ 29228983 (+)
AMCG00010420 NA coding downstream 473989 29249452 ~ 29251205 (+)
AMCG00010422 NA coding downstream 497748 29273211 ~ 29283590 (+)
G80468 NA non-coding upstream 45946 28725007 ~ 28725281 (+)
G80392 NA non-coding upstream 563959 28206321 ~ 28207268 (+)
G80362 NA non-coding upstream 749543 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 834173 27936166 ~ 27937054 (+)
G80264 NA non-coding upstream 974937 27795510 ~ 27796290 (+)
G80487 NA non-coding downstream 102361 28877824 ~ 28878359 (+)
G80489 NA non-coding downstream 124706 28900169 ~ 28994462 (+)
G80491 NA non-coding downstream 180809 28956272 ~ 29023473 (+)
G80490 NA non-coding downstream 286321 29061784 ~ 29064373 (+)
G80519 NA non-coding downstream 333734 29109197 ~ 29110019 (+)
AMCG00010407 NA other upstream 505784 28242989 ~ 28265443 (+)
G80326 NA other upstream 864398 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 896296 27869439 ~ 27874931 (+)
G80249 NA other upstream 1214220 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 2368207 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 719100 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 1990874 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 3698570 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5128352 33903815 ~ 33938237 (+)
G81496 NA other downstream 5925975 34701438 ~ 34707394 (+)

Expression


Co-expression Network