G80487


Basic Information

Item Value
gene id G80487
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28877824 ~ 28878359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100387
gtctgaacattactgcccttgttttaaattctacacttttgacaatataccctaacactctgtttgccttttttattgcttccccacattgcttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagttctattcctcccatagtgtaattatagtggacatttttgttacctgcatgtattaccttgcacttgtccacattgaatttcatctgccaggtgttggcccacaactgaatattatctaagtccctctgaataacGTGCTGCCgatattgtatctgctgagccacctattttagtgtcatctgcaaatttgacaagtttgctaactatcccagagtccagatcattaatatagattagaaaaagcaaaggccctagtactgatccctgtggaactccactaacaacctcactccagttagaagcaactcctctaatcgacaccctctgtttcctagacatcaaccagttcataatccatctacttacattaccctgaat

Function

GO: NA

KEGG:

id description
ko05120 Epithelial cell signaling in Helicobacter pylori infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU100387 True 536 lncRNA 0.40 1 28877824 28878359

Neighbor

gene id symbol gene type direction distance location
AMCG00010414 tle1 coding upstream 294899 28561146 ~ 28582925 (+)
AMCG00010411 rasef,LOC106580191 coding upstream 478433 28396667 ~ 28399391 (+)
AMCG00010410 NA coding upstream 488655 28376842 ~ 28389169 (+)
AMCG00010409 NA coding upstream 506192 28339880 ~ 28371632 (+)
AMCG00010408 NA coding upstream 542948 28303292 ~ 28334876 (+)
AMCG00010424 gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278 coding downstream 169827 29048186 ~ 29060040 (+)
AMCG00010423 NA coding downstream 216978 29095337 ~ 29107346 (+)
AMCG00010421 NA coding downstream 344957 29223316 ~ 29228983 (+)
AMCG00010420 NA coding downstream 371093 29249452 ~ 29251205 (+)
AMCG00010422 NA coding downstream 394852 29273211 ~ 29283590 (+)
G80469 NA non-coding upstream 102361 28771227 ~ 28775463 (+)
G80468 NA non-coding upstream 152543 28725007 ~ 28725281 (+)
G80392 NA non-coding upstream 670556 28206321 ~ 28207268 (+)
G80362 NA non-coding upstream 856140 28021474 ~ 28021684 (+)
G80331 naa35 non-coding upstream 940770 27936166 ~ 27937054 (+)
G80489 NA non-coding downstream 21810 28900169 ~ 28994462 (+)
G80491 NA non-coding downstream 77913 28956272 ~ 29023473 (+)
G80490 NA non-coding downstream 183425 29061784 ~ 29064373 (+)
G80519 NA non-coding downstream 230838 29109197 ~ 29110019 (+)
G80521 NA non-coding downstream 237473 29115832 ~ 29118058 (+)
AMCG00010407 NA other upstream 612381 28242989 ~ 28265443 (+)
G80326 NA other upstream 970995 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1002893 27869439 ~ 27874931 (+)
G80249 NA other upstream 1320817 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 2474804 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 616204 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 1887978 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 3595674 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 5025456 33903815 ~ 33938237 (+)
G81496 NA other downstream 5823079 34701438 ~ 34707394 (+)

Expression


Co-expression Network