G80490


Basic Information

Item Value
gene id G80490
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29061784 ~ 29064373 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100391
GCTTTGTAATCATTAATTTTGGCAGATTGAATGTGCtgtattgaaaatatgtatcaatgtaattgtattgtacGTCTTCTAGCTAAATCACATTATGAATAATGTTATTTACTTTAAGAGAGGAGAATGTACATTTTTGCGAGTTCATGTCTCAACTAGgatcattagtattattttttcgCACTTTGATTTTCAAATTTTGCTATCATACAGAGCAGTATACGAGTAATTACAGTAGATGTTAGACATTTCATAaacttaaatttgtatttaaaatttccCAATTTAAAATACGGGGACCTGTCTAGACCAGAAACTGGTTCCACAAATAGAGCACTTGCCATTTTAATGGTTTCTTCCAGAGTAAACCCTGAACATGTACAATACTTCGGTTATGTTGCAGTAAATGAAGGCAATCTGGTTCTGAATTCAgagcaatacattaaatgtgaggacacgtgtgtgcatttatatacagtattgtagTATGTCCTTCCTGATTCTGAGTATCACTTTGCTAATGAAATCGCTATGTGCACGGAATTGGTGCCTATAAATGAGATCATCTCtgtatcaaaaaataaaataaagatttcatCTGCTTCACCTAACTGGGTGAACTTCTTAAATCAATGACGAGTCAGTACAAACATGAACTGCCTGTAATGTTATGGGAGGACTTCGTCACCACTTTTATACCTGAATTATGCTACGAACATTTACAGGATTTGTTTCAGTAGCTCATTTTCAGAATGTATTCCTTTTCAttaaactttatatttattataattattgtacatATTGCCTTATAGAATTAGTTGTGCCTGAAAAACTGAAGGTTAAATAATCCTCCTCACTTAAAACACCCTTTATATTGAATGTTGCTATTAAActgtacaattacatttgtttcctaAATATTGCGGTGGGGAAAAAATCCAAACCAAATGGCAGTTTGGAaagatgaagagaaagaaagtaatattaataatgtagcgttttaactttgaaaatgaaaatgtctgtgtGGATAGccctattttcttttctttgttttatacatgggttacacacaTCAGGGAGTAACAGTTATACAACCAATTCCTTACTtctgtgtgaaaaataatattttgttagaCTGAAATTCATAAGTAAGTTGATTTGTATTCTGAAGTAATGTGTAGctgttgtgtaaaatgtaactCTTCTGAAGCAATTACATATTCTGATTGGAGCTCCACTCTATACAGTGCACTGAGGAATGTTAAAGGTGCATGCTTAAGGATTTTTAAAACCAGTCCAAAAGCCCCTTATACAATCTATTACCTTTTCCCCCATTCCTGCATTTCACTAGTAAGTTTATTGAAGGACACTTTGCCACacaatgtactttttaaaagtctttTTACTTTAGTGTGCTtctccatttacattttctggtcTGATAGTATTATGTAATAGAAGTGTAAGCAACGGATAACGTGCAGGTGTATTGCTGTGAGTATAACACTGTTtgaccttttaaatatatatttcatatagtTTATAGAAGTTACTTCAGTGAAATATTTTGGTAAATCTAAAGTAAGTACTTTTAAAAAGAGGTAAGAATTAAGTTTACAGACAACGTGGCCTAAAAATTACAGGTTAGTACTCAATTGCATACAAAAGATTGCAATGCATAAAACTTGATACTAGAATAGACTTTTTGCCATATTTGTATTAAGCAAGATGAATGGTTGCCACCTACTTGTTCTGCAAATGTAAAATCTGATTGAGCTCTTAAAGTGAGAACCTGTAGGCTTGTAATAgcctacaaaataaatgtttattttcatcactGCTCTGTCGATCAGTCTATGATGAATTTCACCATGTTGGCACTGGGACCAGAAATGATAAGAAAAGTATAAACTTGAACGAAAAATGCTTGCTTGACATTCACGGTTTTGAATGTGGAACTGTAAGTACCACTTTAAGCATGGTTCCTATGCATTCAAGACAACACTACAGTAgtatttttgggggggggaaagTGACCAAATGCTGCAACTGAAGAATCatgactgtttattttttatttttttggtaatgCCTTAAGCAGCGTTTAAGCAGCAAACCTTCTTTGCCACATAGAAACATGTAtgttgaatgtatatatataaacacagataGTGTGCCACTCTGCCTCATACATGATGCGAATAGTTAACAAAAGGTTATGCAAGACATGAACCAGTGGCTATATCCTGTTTCTGTTTGTCATATCCTATATGCCAATGTGGTGGAATTCCTAACTAGACCtgcatatgtatttgtatttgtattatttgtttgaaagaTGAAAATTTAAATAAGAGTAACATGCAGTATTTCAGATGAGAAAAAAGGGTTTTACAACTGTTCAAATGCATGTATTGTCTGTTGTTTTGGGGAAGGGAAAtcattttgggaaaaaaaacaaaaaactactaCGATTGTGGTATAAACTGCCCCAAAATGGTATTGCTGGttaaaaatatagtaatttTTGGCCATAAGTTTGTACTACTTTGCATTCCTTGAATTGTGCTTCTCTCAAAGTATTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100391 True 2590 lncRNA 0.33 1 29061784 29064373

Neighbor

gene id symbol gene type direction distance location
AMCG00010424 gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278 coding upstream 1744 29048186 ~ 29060040 (+)
AMCG00010414 tle1 coding upstream 478859 28561146 ~ 28582925 (+)
AMCG00010411 rasef,LOC106580191 coding upstream 662393 28396667 ~ 28399391 (+)
AMCG00010410 NA coding upstream 672615 28376842 ~ 28389169 (+)
AMCG00010409 NA coding upstream 690152 28339880 ~ 28371632 (+)
AMCG00010423 NA coding downstream 30964 29095337 ~ 29107346 (+)
AMCG00010421 NA coding downstream 158943 29223316 ~ 29228983 (+)
AMCG00010420 NA coding downstream 185079 29249452 ~ 29251205 (+)
AMCG00010422 NA coding downstream 208838 29273211 ~ 29283590 (+)
AMCG00010425 rfk coding downstream 250927 29315300 ~ 29317556 (+)
G80491 NA non-coding upstream 38311 28956272 ~ 29023473 (+)
G80489 NA non-coding upstream 67322 28900169 ~ 28994462 (+)
G80487 NA non-coding upstream 183425 28877824 ~ 28878359 (+)
G80469 NA non-coding upstream 286321 28771227 ~ 28775463 (+)
G80468 NA non-coding upstream 336503 28725007 ~ 28725281 (+)
G80519 NA non-coding downstream 44824 29109197 ~ 29110019 (+)
G80521 NA non-coding downstream 51459 29115832 ~ 29118058 (+)
G80567 NA non-coding downstream 233785 29298158 ~ 29303550 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding downstream 287781 29352154 ~ 29357030 (+)
G80595 NA non-coding downstream 378737 29443110 ~ 29457978 (+)
AMCG00010407 NA other upstream 796341 28242989 ~ 28265443 (+)
G80326 NA other upstream 1154955 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1186853 27869439 ~ 27874931 (+)
G80249 NA other upstream 1504777 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 2658764 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 430190 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 1701964 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 3409660 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 4839442 33903815 ~ 33938237 (+)
G81496 NA other downstream 5637065 34701438 ~ 34707394 (+)

Expression


Co-expression Network