G80521


Basic Information

Item Value
gene id G80521
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29115832 ~ 29118058 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100431
ACTTGTTTTGAACTGAAAGAGAAAAGTTTGATCACAGCAAACTCCATCTCTACAAGAAGACAGTAGATTCAATTATGTCTCAAAAGGTtgtgaaaacaagaacatatttttaaactgccATGAAAGATTTCTCCTTTAGCATACCAAGGCCCATTCTTCACATGGCTATCGATTGGTGTATTGATTTAAGAGGAACAGATCATTTTGCAGACTACACTGGAATACAATTACCTTTGCTTCTATACGCAACCGCCTTCCTTCCACAATCATTGGCTCTTTGGTAAACTCATCGAAACAGTACTGCCACTCACAAGTCAGCTGCCCAAATGTCCCTTTCGTTACGAAGAATATGCAgcTTTGTGATCATGAAAAAGTCTGAATCATTCACCTTGGCGTGGGCAAAGTACCTATATTTGGCAAATCTTCCATTTTCAATTCTCTGtataaaagcaaagaaaagacATGATGACAATGATGTCTCACAAAAGATTAGTTTCATACTGAAGACTAGAAAAGCAAGAGAGGTATTACCCAGTTGTGAATCTGTCCCTTGGGAGTACAGTACTGGAATGTTAGCATCTTCATTACAATCAGTCGCTGAAATTTGCTAGCTAAAATATTGTGGTGAAGTGAGTAATAGAAAGCATTTCCATATTATATTTTCCCTTCCTTTAATAGTTCACATGTTGTTTGAAGCTCACAATTTAAGAAACCCAACAGTATTACTTTATATTGAAATAGCAGGCCCCAAGAgacttaaatgtgttttttgttttgtaagaaaaaaaaaaaaaagaaagaagaccTTTATAAGTAACTGTTTCATAGATAATctactgtgtttttctgtgcagaaatattatttttggttttgcgCCACAATATTCCAGCTAATTAAGCATTGTCAGCAACACAATAAAGATGAAAAGTTCTCAAccaaaattgtataaaatatattggcCAGAAAATACCAAATCAACATCTTCTGACCTGTAATGTTGTAAATAATTTGCTTGgggttttaaaaaaaagcatttacatGTCAATATGACATTAATATCCACAGTACAAAACCTCCAGTGTCAAATAAAGCATGTACTGAAATTACATTATCAGACTTGAAAGAAATGGTCTCACATAAGGTTAAAGCATGGTTTccttagaaaataaaaaaaacaagcgaAACAAAACTTTGATGTTATGAAATTGTGTTTCGTTACACAGTTTAATCCTTGAGACGCATGCCCTGAGAACAGCAAATGAttaaaaagcagtgttttaaaatacattttattagttcttcacacacaaatagatatACGTATGAACAGAAAATACAGCATGGACAGCACATAAATGAACAGAAGAGCAGTGGCATGGCAATGAAGAAGGCAAAGggttctttaaaattaaaaatattttttaattaggtgTGAAAATAAGTGCTTATATTAGATTGTAGATATAAACCCCAGCCCAAggtaaattaaaatagattcaAATGATTGATTACATTAGATTGATTAGAATTGAACTCAATAAAGAATTATCACTGGTGGATATTTCTTTAAAGAAGCCCTTTGCGATTGGTGCAAGCTTTAGATCAGGACACACAATGGCGGCCACAGACTAACTGCATGACTAACAGCTACATTGACAACTAGGTTGAATGCATGCACTGCTAGCACTTAGCAATTTTATTCTAGCtgccatcatcatcatcatcatcatcctcatcatcacTGTCAGTCCTAATCCATTCAGTGTAGGCCATTCTTTTCTGCAAGCATAACaaaagaggaaagagaaaacataGCCAATGTCAGTTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100431 True 1832 lncRNA 0.34 2 29115832 29118058

Neighbor

gene id symbol gene type direction distance location
AMCG00010423 NA coding upstream 8486 29095337 ~ 29107346 (+)
AMCG00010424 gnaq,LOC106523804,LOC104920278,LOC103361005,LOC103398708,LOC103397278 coding upstream 55792 29048186 ~ 29060040 (+)
AMCG00010414 tle1 coding upstream 532907 28561146 ~ 28582925 (+)
AMCG00010411 rasef,LOC106580191 coding upstream 716441 28396667 ~ 28399391 (+)
AMCG00010410 NA coding upstream 726663 28376842 ~ 28389169 (+)
AMCG00010421 NA coding downstream 105258 29223316 ~ 29228983 (+)
AMCG00010420 NA coding downstream 131394 29249452 ~ 29251205 (+)
AMCG00010422 NA coding downstream 155153 29273211 ~ 29283590 (+)
AMCG00010425 rfk coding downstream 197242 29315300 ~ 29317556 (+)
AMCG00010433 NA coding downstream 391584 29509642 ~ 29513418 (+)
G80519 NA non-coding upstream 5813 29109197 ~ 29110019 (+)
G80490 NA non-coding upstream 51459 29061784 ~ 29064373 (+)
G80491 NA non-coding upstream 92359 28956272 ~ 29023473 (+)
G80489 NA non-coding upstream 121370 28900169 ~ 28994462 (+)
G80487 NA non-coding upstream 237473 28877824 ~ 28878359 (+)
G80567 NA non-coding downstream 180100 29298158 ~ 29303550 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding downstream 234096 29352154 ~ 29357030 (+)
G80595 NA non-coding downstream 325052 29443110 ~ 29457978 (+)
G80599 NA non-coding downstream 365233 29483291 ~ 29484341 (+)
G80652 NA non-coding downstream 653369 29771427 ~ 29775799 (+)
AMCG00010407 NA other upstream 850389 28242989 ~ 28265443 (+)
G80326 NA other upstream 1209003 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1240901 27869439 ~ 27874931 (+)
G80249 NA other upstream 1558825 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 2712812 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 376505 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 1648279 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 3355975 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 4785757 33903815 ~ 33938237 (+)
G81496 NA other downstream 5583380 34701438 ~ 34707394 (+)

Expression


Co-expression Network