G80599


Basic Information

Item Value
gene id G80599
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29483291 ~ 29484341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100535
CACTTTTGTTATACCCATGACAGTCTTTTCAGtatgatttgaaaataaacacactgataaaaagtttttactttctttcattATTCTGTATATACAATTTTGGCAATTTAGCATAGTGCATATTTGTTTAAGGAGAATTGTAACTCTAAAAGCTCTAAAAAGTTGTCTGTCTTCGCtaacaattaaatattgtcTAATATCCATTCATTAAAGCAGAATAAGAACAGAACTGAGAGATGTGCCAAAGTTGTTCTAATTAATTGAAGATACACTtcagaacaaaagaaaagaagcaaaTGATGAGGTGACACTTGGCCTCTCACTTGTCTTGTTGCCAGTAGTTCAcacatacaaaaactaaatcaagCTGGAGGGAGACGAAAGAACAAAAATCCAAGAAACGGTTGAATGCTTTGCTCCAAATAGCCACATTTCCTTGTGTAAAAATGTGTCTCCTGTTCTTAGTTTTGAGTCCAATTATACTTAATTGGCTATTGTGCCCATTGAATATGGTCTGTATCCGAGTTTAAGTAATTGTTCAGATTTAATTTACCAGTCTTTTCAGGTTTTAGAATAACTcagtcaaatgttttcttttataccAGGATCAAGATATCCAATTTGTCTTAAGTATCCATACATATAATActttcaatacttttttttttattctggttgctcttctctgaactgtGGTAGGTGGAAAAAAGATTTTGTAGAGCGGTGATCAGAAGTATGGAAATTACTAGAGATGACTATGTACTGGAGTAGTTTtatccattttatttagttCCTCAAACACATAGGAATATACACTTATGCAAAAGCTAACAGGTTTTGAAATATAGGtgatcaaaaatatattaaatgagaTTAATGAATTCTcagttagaattattttaatttaaccaaCCAATATATATGTTCATTGAATCTGTTATGGGTGAATGCATGTAATTTAATGGAAAATCAGAAATTGTAGTCAGAAATGTATTCACAGTGCTATGTTTCCCGTCATGTTAATTAATGTGCttgaaaactgaatatttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100535 True 1051 lncRNA 0.31 1 29483291 29484341

Neighbor

gene id symbol gene type direction distance location
AMCG00010425 rfk coding upstream 165735 29315300 ~ 29317556 (+)
AMCG00010422 NA coding upstream 199701 29273211 ~ 29283590 (+)
AMCG00010420 NA coding upstream 232086 29249452 ~ 29251205 (+)
AMCG00010421 NA coding upstream 254308 29223316 ~ 29228983 (+)
AMCG00010423 NA coding upstream 375945 29095337 ~ 29107346 (+)
AMCG00010433 NA coding downstream 25301 29509642 ~ 29513418 (+)
AMCG00010432 carnmt1,LOC107673371,LOC107599972 coding downstream 31418 29515759 ~ 29524516 (+)
AMCG00010434 NA coding downstream 43443 29527784 ~ 29551538 (+)
AMCG00010437 NA coding downstream 314899 29799240 ~ 29814090 (+)
AMCG00010441 NA coding downstream 365054 29849395 ~ 29864398 (+)
G80595 NA non-coding upstream 25313 29443110 ~ 29457978 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding upstream 126261 29352154 ~ 29357030 (+)
G80567 NA non-coding upstream 179741 29298158 ~ 29303550 (+)
G80521 NA non-coding upstream 365233 29115832 ~ 29118058 (+)
G80519 NA non-coding upstream 373272 29109197 ~ 29110019 (+)
G80652 NA non-coding downstream 287086 29771427 ~ 29775799 (+)
G80663 NA non-coding downstream 374432 29858773 ~ 29860382 (+)
G80746 NA non-coding downstream 822144 30306485 ~ 30307387 (+)
G80830 NA non-coding downstream 1032932 30517273 ~ 30519628 (+)
G80969 NA non-coding downstream 1562385 31046726 ~ 31070527 (+)
AMCG00010407 NA other upstream 1217848 28242989 ~ 28265443 (+)
G80326 NA other upstream 1576462 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1608360 27869439 ~ 27874931 (+)
G80249 NA other upstream 1926284 27556415 ~ 27557007 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other upstream 3080271 26380467 ~ 26403020 (+)
AMCG00010431 NA other downstream 10222 29494563 ~ 29503523 (+)
AMCG00010467 NA other downstream 1281996 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 2989692 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 4419474 33903815 ~ 33938237 (+)
G81496 NA other downstream 5217097 34701438 ~ 34707394 (+)

Expression


Co-expression Network