G80652



Basic Information


Item Value
gene id G80652
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29771427 ~ 29775799 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU100605
GctaaaataaagacatgttCGAGAAACACCTCAATTTATAGAATTGCCTAGTTTACAACTGATGAAGACTTACTTTTCCGTAGCTGAGGGGCACTCCTGGTAGTGAGAATCTCAATGAATTTGCTGCAGTCTGTGCCTTTCCTCTTCTCTCCAGCTTCATACAGAGCCTGAAGGGCAAGATGTTGGATCAGACCTTGGCTGGTGTTGCAGACAGACATGCAATGGTGCTGTAAACTCATTTTGACAGCTTTTTGGACTTTACAAGACTATAATGCAGTGTACTCGCCAAGGAGTATGATGGAAAGGGAGCCGATACTCTGCAGAAATAAAAGGCTGaaggtttaaattaatatgaataaactaATGTGTACCAAAGCCTTCCAGCCATGGACTTCATAAGGGTATTCTTCCAATGGCAATGGTCAAAATATTGTTATTCAAGTTAGTCTCTTAGTGTTGACAAAATTCTACCTACAGCTCAAAGTGGAGGATGGCCAGTTCAAATTTAGGCATTAAATCCAGaacttgttaaaaataatggacaaaaacactaaaaactcTTACTCTGGCATCAGCGTCAGCCAGGTCATCATTCACAACTGAATCTTCATTTCTAGTTGCCTGAAGAAAGAACAAAGGGGCTTATGaaatgttatttacatttacatctgCCTGCTGTTCACACAAACTAGCCCATTACCTTGCAAAGGGAGAGCAGTGCGGCCCTAAAATCTCCACTAGTGTCTGACTTGATGTGGTCTTCCAGTTCCTTTTTGTGCTCTGAAGCAGGGAAAAGAAAACTTTAAAGAAAGAGCATGAAGAATATTCATAACACTAGGTGAAGAAACGGAGGTAGCAATATTTACGCTCTTTGTAGACTTTTTTGATCTCTCTGAGCTCATTGTTTGTCCTGGATGCCATAATCTCAATCAAGGTGTCCTCATCAGTCCCGAGACCGCATGGAATTATAAAGCAGCTCGGCATCGTACTGTGCCGGGGTTTTCAACAGAGCCAGGACAACATTTTCAAGTTCGCCGCTGAGTGCAGATTTCAGAGCAGCATCCAGGGGCTGAAACACACATTTACTACATCAGacatagaaaaatatacatctaaAAGCCTTGTGAGAGTTATTCATCTCATCCCTACCTGCCAAGATCCCCCTCCACACACGTTTAGTTTTCACATGAAAAAGGCACAAACTGTGCACAAGAGGAGACCATCTGTAATGCACTATAGATGCAGGGTAATACATCAGCTTCAAGGTTACAGTAACTGCAGATCGTTGACAAAGACAGTAGAAATATCTCTATCTGAACTCTTGCTGTATTACATGTTTTGACATTCCAATTAGAATAgtattaatttatcattatgCTCAACATACGTGACTGAACTAcacttaatgtatttaatttaaagtacattttcaaatggcTTCAGTGATGCTAGAGAGATTTagaatacatgtaaatattgcCCACTTACATCAAAAGCCAATGGTTCTCACCTTTCCAGTGGCCTGCTGATAAGCTGCCTTGATCTGCTGGCGCTGGGCATTGCTTCTCTTCACAAGTACATCAATAATGGTGGTTTCATCCACTCCTGGggaacaattaaacatttagatCTTCCTGCCTAATGGGAATGTGATGCATCAAGTAAattccaaaattaaaaaggcTTCCATGGAGTCAAGTCTCTGCTTACACAGGCTGTCGGTGTGTCAGTGGATTAGGACAAGTAGGGATTCAGAGACAGGGATACAACCCAAAAAATGGGCCACTTGCTGGTCTTTGGAAACCAGAGAATTATACACTGCACATGACTGATAAGTTGGTATAAAATATTCATCTTTGAAAAAAACTTCTATAGTTATCACAGATATGCAGGACCTCttaccttttgtttttattgctttttctaAAACCGCAGCATCAGAACTGGCACTGAACTGTGCATAAGGAGTGACTGTTCCTTGCGGAGAGCCCTGTGAAAAGGTaggtctatttattttaaaacaggccAATGGAAAAATTGGTAAATAAACTAGTTTAACTAACCTCTAGCCCCCTCTCTTATTTTTAAGGCTGAAGCAGACAATTCAAGTTCGTGGGAGTGGCTTGCATTCCTGCTTTATGAATCACCAGCTAAAAGGCCAGATTTTACTCACTACATATACAAAGTTAGTTATATTTTCCAGATGAGGGGGGAAAAGGAAAAGCTAAACTTTTATATAAACCAACAGGattcaaaattgaaaagacTTACTGAATCATCAGGCATTCCCATGTAAAAGGCTTGCTGAAGAAACTCTCTGACGAAGGACATCTTGTGCTATGGGTCTGGTTCTGCTATGGTATCAAATTAAGGACTGCAAAATGAATTGGGCACAAACTCAAATACAAAGATTGAATTACATAAAAGTCCCATTCTGGCTTCAGCACTACTTTCATAACCCACAGGAGGTGCCTATAGAAGACACCTGCATATTGTGAAATTCATACGTGCATTTCATTTACAATCCTGCCTTCTTTTATCTTTAGGGATGCACTGTACAATGCATGATCTAGTTAAAGTGTTTCAACACTGGGTACAAGGTTTTCATTTCAGagaaaacatttcagtagtTTTATGAAGATACAGACACATGTGATCTACAGGTCCTAAAGTAACGttgaatgttaaatgtattggaATATATAGGCGTAACCGTTTGCCTcaggttaaataaaaaagcaagcaTTTAGGGTAGTGGCCTTAAGCAAATATCTTGCAGGCTTCACATACCTGTAATCCTGGATTATTGTTTACCCTTATAAAATATTCACAGCTATGGTTTTATTAGAGCTTTCTACAGAGAGAAAGTCTGCGCTCAGTCAGCCACACCCAAACTTCAAGAAGTCACCCCCATTACATGTATCCTTGGTACTCAAATTGTATAAAATAGTGAAgtacaaagaaacattttgcaCAGTCTTAATCTAtcgtgttaaaaaaaaagtcactttaCATTAACCTTGCTCTGCCCCAGAAATGAAAAAGTCCCACAATTGTTGGCATTTTGTTCACTTCTGAAGCACAGACTGACACGTCACAGGGTAAGACCCAAAGAGAAAAGTCAACAAATGTGCAACTTTTAAGGGGCGGAAGGAGTTGCACGCACATACAGATGTTTTCTATACAGTAACGTTACAgaactttaaaaatgcagatgttACTGCAGCCACTGCAAACTTCGTTCCAAACTACTCTCGAGACTGATGCGGCACCACGCCCATGTTTAACCGCACAAAGAAATAGTGATACAGCTACCTATCTATTGGATTTCTTGCTCCACAACTGCTCAAATAAAATCTACAAGGATCTCTTACCACTTGTCCTGGAAGCCTGAAATCTTTTTCCAGAGTGTCAGACTGAAAGCAGGAGGGAATCGTtacaacatatatttatactcaGATCGCCACACCTAGCAACAGGGCTTGCCATGCACTCCAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU100605 True 3498 lncRNA 0.40 2 29771427 29775799

Neighbor


gene id symbol gene type direction distance location
AMCG00010434 NA coding upstream 219889 29527784 ~ 29551538 (+)
AMCG00010432 carnmt1,LOC107673371,LOC107599972 coding upstream 246911 29515759 ~ 29524516 (+)
AMCG00010433 NA coding upstream 258009 29509642 ~ 29513418 (+)
AMCG00010425 rfk coding upstream 453871 29315300 ~ 29317556 (+)
AMCG00010422 NA coding upstream 487837 29273211 ~ 29283590 (+)
AMCG00010437 NA coding downstream 23441 29799240 ~ 29814090 (+)
AMCG00010441 NA coding downstream 73596 29849395 ~ 29864398 (+)
AMCG00010440 NA coding downstream 138794 29914593 ~ 29926083 (+)
AMCG00010448 abhd17b,LOC103022021,LOC107599913,LOC106580059 coding downstream 206391 29982190 ~ 29983125 (+)
AMCG00010447 NA coding downstream 216133 29991932 ~ 30021803 (+)
G80599 NA non-coding upstream 287086 29483291 ~ 29484341 (+)
G80595 NA non-coding upstream 313449 29443110 ~ 29457978 (+)
G80580 pcsk5,LOC106580081,LOC107548272,LOC107723238 non-coding upstream 414397 29352154 ~ 29357030 (+)
G80567 NA non-coding upstream 467877 29298158 ~ 29303550 (+)
G80521 NA non-coding upstream 653369 29115832 ~ 29118058 (+)
G80663 NA non-coding downstream 82974 29858773 ~ 29860382 (+)
G80746 NA non-coding downstream 530686 30306485 ~ 30307387 (+)
G80830 NA non-coding downstream 741474 30517273 ~ 30519628 (+)
G80969 NA non-coding downstream 1270927 31046726 ~ 31070527 (+)
G80988 NA non-coding downstream 1331261 31107060 ~ 31107603 (+)
AMCG00010431 NA other upstream 267904 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 1505984 28242989 ~ 28265443 (+)
G80326 NA other upstream 1864598 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 1896496 27869439 ~ 27874931 (+)
G80249 NA other upstream 2214420 27556415 ~ 27557007 (+)
AMCG00010467 NA other downstream 990538 30766337 ~ 30817603 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 2698234 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 4128016 33903815 ~ 33938237 (+)
G81496 NA other downstream 4925639 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 4980720 34756519 ~ 34845876 (+)

Expression



Co-expression Network