G80969


Basic Information

Item Value
gene id G80969
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31046726 ~ 31070527 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100997
TGTTTATTAACTTTAACACGGAGAACAACAAGTTGGcttgctttcagttttattagAACAATACAGGTCTGAGAAAGACATTAAGTTCTTTGATGAATGGAAGGTTCATGAACTTTCTGACCCATAAACTTTAAGTACATATATTCTCAGTGGCAAAATGTCTGTTTGTTATTGAGTATTGTTAGCTATGTATTGTACAGTGAAGCCTCTGCCTTTTCATGCAAGACTGTCAATAGTGAAATATGTATTCTGGAAGATAATGTACACATACGTTCTGGTCCTTTTATAATCTCACCTAATAGAAAAAGACAATTcagtaaaaacaattatatcagGCATTTCTGAAGAGCAATCTCCTTCTTGATTGCATTACTGGAGTTTGTTGAACAGTAGCATAGGGACAGTCACATACTGGTTCTTTCAATCGAAATCATTTCTTGAACACAGTCTAGTCCTTAATTATATCAATTAATTCACCCAGTCCAGAAGCAAGCACTTTTTTGTGAGGACATCCTCTGTAAAAGTCTGTGATCTGCAATAGATGCCCTCGCGAAATGAATCCTGTAGTATTGCCTAGGATCCTACAGCACAGGTTGGCCTTGGAGATCTGTGGGACTTTCTGGGTTCTGTAATATTGTAGCCCTTAAGTAATCAATTGACACATTAATTGAGCTGGTAAAAATCTTCATTCACTGCAGGTAGGCAGGTAGTTAGTGTTCTCTATAAAAGCAGCAGACTTATGGCTCTCTATAGCAGGGGTTGGCCTGTAGAGGTCTATGGTTAAGGCTATTGGATTGTCTAGTGTCCTTCATCATGCCAAAGGAGACATTGTTTGTTAAAAGGGGATTAGGAATACAAATAACCTCTTGCCATAAATTGACCAAAACACtggtatattatattaattatattacacaGAATTAATTCACATAGTTTGTAGTGACCTTTCTACAAGCATGCCAACCACTTTAGACATTTTGAGATTCTGCTGCCTGGTATTTAACTGGAGAAATGTCAAGTCTACTCAAGGCAGCATAACTCTAAAGGAATGTGTACACAGCATTCTACCAGCTATCATATGGCATTGAGTAGAGTCAATAGGACTGGTCATGTCTGTCAAGTTAAATTagctatttatgtatgtatgttcagGGTTTTTCAGATTGTAGGTGTTTGTTGTTTCAATTgactataaatataattttgcagGGGGGGAGGGGTATACTTAAAGTATAAGGTATAGGCTACttattagttttattgttttgctactaaactaattttaatgtattgtttacctcatacatttattaaattgcaACTGATTCAAATGAGAAATGTTGAGAaactcaaatgtaattaattgaattcaaGACTCTTCCCATTAATAGTATTAAAGCTACTCACAAATCGGTCATATCAGATAACAGCATAACAATTTTCCAGctcataattaaatatgcacGTTACTTGAAAGTTTTCATCCTTTGATTTACATATTCCAGGAATTTCCTTTGCAGTACTTCACTGTGTAGTATTTTTAGTGGAATTTTCCAAATTATCCATAGGTTTGGTCTCCAACCATAATATTCTCCAAAGACACTTTCACAAATTCCCCTGCTGTTTTGGTAACAAAATTAGGCTTCTGGTAGTTAGTCATGGGAGTGGAAACGCCAAAGGGAGTaagacactgaaaataaattcaccaaaaatatgaatacagtaGGATGTGGCCTCTGACAATAAGATACACTGATTGTAGCTGCACCATAATATTGAAGAAAACTCCAGCAGAACTCTCTTTGATACCTTGATATCAACACATCtatcaaatgaaataattaattagctAAACTGTTGCTTTACCTAAGGTTATTAATACAGTCAATGTTACCTGAATGATAATTCCTTTTGATTTATATTCCGCTTGAAGCCCTCTTGAAAATCTTTCAACAAAACCCttgtcatttaaaagaaaacaaaaacaattagacatcaaaataaaactttttttttttcacaaacactTTTAATAAGTAACCATGTTTCTAAAACATATACTCACATGTGTAAAGTGCCTAATAATGTGTAATGATTTATGTttcaataatagtaatgatagagacttttgaaattaataagaCCTTTATGAGTCCCTGGCCCTCCTTAAAGACTGAGGCTGGGTTAATTCAGgtgattacatttgtttattagaTCTAAATACAGATGGGACCAAGATAGAAGACCCAAATAAACTGATAGTAAAACTGACTAATAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU100997 True 2278 lncRNA 0.34 3 31046726 31070527

Neighbor

gene id symbol gene type direction distance location
AMCG00010476 NA coding upstream 6533 31037640 ~ 31040193 (+)
AMCG00010475 NA coding upstream 33898 30993603 ~ 31012828 (+)
AMCG00010474 NA coding upstream 119186 30892385 ~ 30927540 (+)
AMCG00010470 NA coding upstream 287926 30739193 ~ 30758800 (+)
AMCG00010469 NA coding upstream 311653 30708690 ~ 30735073 (+)
AMCG00010480 NA coding downstream 12356 31082883 ~ 31087934 (+)
AMCG00010483 NA coding downstream 43995 31114522 ~ 31119247 (+)
AMCG00010486 LOC104966306,LOC106585191,LOC100702629,LOC103397673 coding downstream 359182 31429709 ~ 31589396 (+)
AMCG00010484 NA coding downstream 846057 31916584 ~ 31921133 (+)
AMCG00010485 NA coding downstream 854395 31924922 ~ 31938388 (+)
G80830 NA non-coding upstream 527098 30517273 ~ 30519628 (+)
G80746 NA non-coding upstream 739339 30306485 ~ 30307387 (+)
G80663 NA non-coding upstream 1186344 29858773 ~ 29860382 (+)
G80652 NA non-coding upstream 1270927 29771427 ~ 29775799 (+)
G80599 NA non-coding upstream 1562385 29483291 ~ 29484341 (+)
G80988 NA non-coding downstream 36533 31107060 ~ 31107603 (+)
G80989 NA non-coding downstream 39241 31109768 ~ 31110142 (+)
G81020 NA non-coding downstream 488189 31558716 ~ 31627547 (+)
G81026 NA non-coding downstream 701627 31772154 ~ 31772357 (+)
G81029 NA non-coding downstream 851222 31921749 ~ 31922050 (+)
AMCG00010467 NA other upstream 229123 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 1543203 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 2781283 28242989 ~ 28265443 (+)
G80326 NA other upstream 3139897 27906497 ~ 27906829 (+)
AMCG00010393 isca1,LOC107662049 other upstream 3171795 27869439 ~ 27874931 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other downstream 1403506 32474033 ~ 32530266 (+)
AMCG00010529 NA other downstream 2833288 33903815 ~ 33938237 (+)
G81496 NA other downstream 3630911 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 3685992 34756519 ~ 34845876 (+)
G81576 NA other downstream 3941788 35012315 ~ 35012693 (+)

Expression


Co-expression Network