G81279


Basic Information

Item Value
gene id G81279
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33310852 ~ 33315569 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU101405
gtgacgtcagcgcaggtttgtcctctttttcCATTTCGTTGgacctgagaacgtgagctttctgtgtctgtgtttgtataaacattcaaactgcgtatttcggctggctggctcacttcatagtgttgttcaccactgttttcgctacacatcgtctctgtcttgtgtgtgtttagttattattgatagctaatcccgattctgtcccatCCGCACACAGGAGGTCCGGCTgagctttcggtttcagtttcgttcacaagaagagccgttttaaaatattagtcgtgtttatatagtgttatatatattctgactgcttgctgtgttggttttttgtccacaggaccttttcctccgcagcaggagtgctagcagcggcagtaaaattcgaggcccggctgcccggtaTGAGGTGCTGCTCTGCCGGCTTGCACCCACACTACAGCCtgcagctgcggctgtaggagatcttgctctctcagttcactgagaacgagcactgctagccctccccggtctgtgtgtgtaggcctcggttttagatcccgctacggctggtggtctactaccctcggcccccagACTCCgtgtcacccggtgtccccggaaacccccaGCACACACAATGAGCAGCATCAATCACATTGCCTAAATCTACATCGTGGCAGCCGTGCTGTGTTTTACTGATGATTAATAATTGTGCCATATATTCAAAAACAGCTACCAAATCCAAGACCTAATATGTTTCTtcagttaaatattgaatttcaagCCACAACTCACATACTGATACGGCAAaccaaccatgaagaccaaggcgTTTTCTAAACAAATCAGAGAAAATGTGGTTGAGAAACACAGATCAGGGGAAGGTTACATGAAAATTTCAAAGTGACCATATACAGTGAAGACCATCATTAAGAACTGGAATGTGCTTCATACCACCCAGTCACTACCCATGTCTGAAATGGGACTCAGTGTTAATACATCAACACTATCCCAGTCCCTACATAAAGCTGGCCTGGGTGAGGGAGTGGCAAGCAAGCAACCATTCCTGAAAATAATCCATCTTAAATCTCGTATGGGGTTTGCGACAAAGCATGTAAATGATACTGCAGACATGTGGCAAAAGGTTTTGTCATCAGATGAGACAAATTCAAAGCATTATATCTGGCGCaagcccaacacagcacataacccagtcaacaccatcccacCGGTCAAGCATGGTGATGGCAGAATCATGTTATGAGGATACTTCATATAAACAAGGACTGGGATGCTTGTTAGGATTGAGTGGGAAATGGATGGTGGGAATCTAAAACTGAAttgagaaattacattttagggGGACAATAACATGGAGTACAAGGCCAAAGGCACAGAGAAATGggttaaaaataagaaagtgaatgtccttgagtgtcAAAGTCCAAACTTGAATCCAATATTGCAAGCAATTTTGTGAGGAGGAATTGGCAAAAATTACACCACCCCACTGTGCAAAGCAGGTCAAAACCTATCCTAAAAGACTCACAGCAGTCAGGTGCTGATGCAGGGGGCTGAACACTTACAGAATCAgtcaatttcaaatgaaatatatttgcatgttttggtgacattcagagcgtatatacagtatatataaagcagcaatttcatatattaataaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101405 True 1676 lncRNA 0.44 3 33310852 33315569

Neighbor

gene id symbol gene type direction distance location
AMCG00010511 NA coding upstream 201142 33105932 ~ 33109710 (+)
AMCG00010510 NA coding upstream 207485 33101960 ~ 33103367 (+)
AMCG00010512 NA coding upstream 218910 33077831 ~ 33091942 (+)
AMCG00010513 ap3s1 coding upstream 253051 33040995 ~ 33057801 (+)
AMCG00010502 kcnn2,LOC100135971,LOC106564970,LOC108435393,LOC108276576 coding upstream 453027 32845391 ~ 32857825 (+)
AMCG00010519 NA coding downstream 223281 33538850 ~ 33583439 (+)
AMCG00010517 NA coding downstream 285974 33601543 ~ 33608079 (+)
AMCG00010518 NA coding downstream 301453 33617022 ~ 33638956 (+)
AMCG00010520 hsd17b4 coding downstream 344248 33659817 ~ 33670180 (+)
AMCG00010524 NA coding downstream 635393 33950962 ~ 33954615 (+)
G81226 NA non-coding upstream 282892 33026897 ~ 33027960 (+)
G81215 NA non-coding upstream 342345 32968261 ~ 32968507 (+)
G81149 NA non-coding upstream 636198 32576649 ~ 32674654 (+)
G81115 NA non-coding upstream 842589 32467842 ~ 32468263 (+)
G81103 NA non-coding upstream 937986 32372463 ~ 32372866 (+)
G81372 NA non-coding downstream 717135 34032704 ~ 34035798 (+)
G81383 NA non-coding downstream 787269 34102838 ~ 34104640 (+)
G81407 NA non-coding downstream 880498 34196067 ~ 34196426 (+)
G81474 NA non-coding downstream 1364407 34679976 ~ 34680716 (+)
G81479 aldh7a1,LOC102786701 non-coding downstream 1368720 34684289 ~ 34685762 (+)
AMCG00010497 dcp2,LOC107568646,LOC104944318 other upstream 780586 32474033 ~ 32530266 (+)
AMCG00010467 NA other upstream 2493249 30766337 ~ 30817603 (+)
AMCG00010431 NA other upstream 3807329 29494563 ~ 29503523 (+)
AMCG00010407 NA other upstream 5045409 28242989 ~ 28265443 (+)
G80326 NA other upstream 5404023 27906497 ~ 27906829 (+)
AMCG00010529 NA other downstream 588246 33903815 ~ 33938237 (+)
G81496 NA other downstream 1385869 34701438 ~ 34707394 (+)
AMCG00010545 megf10 other downstream 1440950 34756519 ~ 34845876 (+)
G81576 NA other downstream 1696746 35012315 ~ 35012693 (+)
AMCG00010562 NA other downstream 2154766 35470335 ~ 35477590 (+)

Expression


Co-expression Network