G82053


Basic Information

Item Value
gene id G82053
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37451121 ~ 37455288 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102356
tgtcaatgtcatttttttattttattttcaaataaacaataataattataataataataataataacccccATAGTTGAACAGGTAACATACACAAGCCTGCTATATGATAATACTGTTGACTGCACTTCAAAAGATAGTTCACATTCATTAAACATCCACATGCAGAGCCCTGGCTTTAGTGGCATTCAGTATAAACAATTGATTAGTATCGGTTCCAAATTAAGTCCTGGAATTGTCTCTGTGTAACTTTAAACATCTGAACAGTCAACATGGCATATTACAGCTTTACCAGCTAAATGGggttaatatacatatttaacaaaaattaCATCTTGTTTAAATTATAGGTTTCaattagtttacatttttatatatataaaaatattgaacacatttaaaaatgattttgcacatgtataaaaaaaaataattgaaatccaTTAGTTTTCTTCTGGGTGTTTTCATTTGTTACTAGTGCATCTCCACTTCTGTTGGTACTTTCTTTCTCATTACTTTCTTCTTcCTTCTGACCACAAGAAAAGCTATAGCAGAACTGAGGGCTATTAGAAATATGACTCCGCCTATGGCTCCTACTATTAttcCTTCATTCCGACTAGCTTCATCTGGATCTGTCTCTTGTCCTAAATTTTGTCCTGATCTTCCGGCTACGTGGCACGTTTCTCTGCACTCTTCTTTAGTTTCAAATCGGTTCCCATTGCCCTGGCAGCCTCCATAGATGAAGGATTTGCAGGTTTTTAACTCTTTGTCATAGTAGAACTTCAGCAATCTGCCCAAACATATTCCACTGTCCTTTTCCAGAGAACACGCTTcacGTCCAACGGGGTAGGAATGTTTCTCTGAGCAGTTCCTCATGCACTCTTGGTCCGTCTGAAAGCGATTCTCATTTCCTCCGGCTCCTTTGAAAATGAACGGATGACAGAGGCCCTCGGACTTGACGTAGAAAAAGCTGAACTGTATTCCATTCCCGGTTCCTTCATCCTTTGGAAGCGAGCAAACTGTCAATAAGGAAGATTAACATATCAGTTATGAGCCTCTAACACTGACCATGCTTTTGTCTAGATAGTAGACCAGATTTCCCTTGTTTAGGTCTTCTGACTTCCAGATATGTTCCCTGCCACAATGTGGGACAGTCAtcaaggaaagagagaaagatagacTGTATATACGCACGCCTGTTGACCTTGGCTAGGTCCTCTATCAAGTTTATTCAAGGCAAGTTGAGTTATTATACAAGATGGCCACCACAAGCAAATCAAATTACACCTATTGTCACTtcgcatatatatttatactcaTCACAGCtcagttattatttgtatgttttaactAGTATTACTATATGCCACATCCATACAGACATACTTGGCCACCTATATTGcagcttgcagctatattttctatttgtaatgATCTGTTTGCCATTACATCAGCAGTGCTGGTGAGTAGTAAGTAGAGAAATAATGGATGCTTCTCAAGGAGCTGTATACAATACTGTGGAAAACAGCTTAAAACAGATTCACATGTCATCACCAACTGCTGGAATATGATCGGCACTAATCATTCAAAGAAGAAACCACAGACACTGATGAACCTGCAATAAATGAACACAACCGAAAATGGCGTTGAATGATATTGTTTTGTCCTCTTTtagcttaattaaaccactaaGATCAAATTGTGAGGTAAACGCATCTTACTTACACTCAGGGAAAGCTATAACAGAAACGACTCCAAAGAAATAAAGTCCACAATGAAGAATCCCCTTCATCTTCTCTTTTGGATGGAAATACTCTGACCCTTTGAGCTCTCTCAGTGGAGGACGGTGTTATAATGGTGCAGTAACTGCCTGTTTTTACCAGGAAGCTGCCCTTTACACCCGAAATCATGAGTCAAGTTTTTATGGCACTAGGAGAAACC

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU102356 True 1940 lncRNA 0.38 5 37451121 37455288

Neighbor

gene id symbol gene type direction distance location
AMCG00010620 NA coding upstream 50322 37394062 ~ 37400799 (+)
AMCG00010621 NA coding upstream 57914 37388703 ~ 37393207 (+)
AMCG00010622 NA coding upstream 84629 37363078 ~ 37366492 (+)
AMCG00010615 clg13h5orf51,LOC106585203,LOC106580621,LOC105894184,LOC101465834 coding upstream 89366 37357271 ~ 37361755 (+)
AMCG00010612 rgs7bp coding upstream 227802 37221441 ~ 37223319 (+)
AMCG00010627 NA coding downstream 19622 37474910 ~ 37481880 (+)
AMCG00010626 NA coding downstream 27150 37482438 ~ 37494740 (+)
AMCG00010634 ankrd55,LOC107578565 coding downstream 313491 37768779 ~ 37781102 (+)
AMCG00010635 NA coding downstream 340241 37795529 ~ 37809247 (+)
AMCG00010636 NA coding downstream 409774 37865062 ~ 37873485 (+)
G81990 NA non-coding upstream 183774 37266762 ~ 37267347 (+)
G81983 NA non-coding upstream 197493 37252167 ~ 37253628 (+)
G81954 NA non-coding upstream 337940 37112975 ~ 37113181 (+)
G81880 NA non-coding upstream 822415 36627901 ~ 36628706 (+)
G81814 NA non-coding upstream 1303113 36147543 ~ 36148008 (+)
G82059 NA non-coding downstream 42454 37497742 ~ 37498116 (+)
G82056 NA non-coding downstream 43829 37499117 ~ 37520738 (+)
G82061 NA non-coding downstream 54943 37510231 ~ 37510832 (+)
G82057 NA non-coding downstream 70795 37526083 ~ 37533144 (+)
G82063 NA non-coding downstream 99165 37554453 ~ 37556601 (+)
G81987 NA other upstream 187072 37261324 ~ 37264049 (+)
G81971 NA other upstream 199952 37230428 ~ 37251169 (+)
AMCG00010585 NA other upstream 1356624 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 1371229 36077113 ~ 36079892 (+)
AMCG00010563 cdc42se2 other upstream 1924897 35480800 ~ 35526224 (+)
G82192 NA other downstream 430932 37886220 ~ 37888163 (+)
G82236 NA other downstream 713868 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 791733 38247021 ~ 38252010 (+)
AMCG00010655 NA other downstream 892990 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 912381 38367669 ~ 38372651 (+)

Expression


Co-expression Network