G82056


Basic Information

Item Value
gene id G82056
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37499117 ~ 37520738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102360
ctcaattctacactttttttttcaatgcatgCTGTACAGTTAATGTATCTTAAgaaagataatttattttcctttttctattttcagaCCATCCTCAATCCCCTTTACGAGGGAACTCTACCCCCTGCTTATATAGTCATGGTCTCAATGGGCATATGGGCTTTCTTCTCCTCCGGGGGCTCCGTGCAGAACCTGCAGTGCTTCTTCACATGTAGTAAAAGCGACGTGGATTCACAAGTTACTTCTTAACGCGGACATCCCGTCGATGCGGTGTCACTTTTGGGCAGACGATCCCACCCGGATTTCCCAGGCGTTCCTGCAACGCTCTGGAAGAAAACGACACCAAGCAAACTACAGGAGGGGGGGGCTGTGGACGGGCAGCCGCATGGACCCAACGCTCCTCCCTGTCCGGAGAACATTGCTCGAGGGATGAGTCATCCCGTACACATCGTAAATGGACTCGATCTCTTTTTATGCCTTCTTGTAATcctgagagagtgagtgagtgaaacGGATCCAAAAAGAGAgaactgttttaattttttcctaGTCTTTTATTTGGAGTAGGGCTGTACTAAACGTcatctgttttctttgtatttttttactatatGATGAGTGTGAAACGGGAACAGTAGCTTTTATAATCCTTCTTTTACAAGGATGCTTTTCAGTTTATTCTCCCTTTCAGCCCAAGGATTTGATTCATATCGTgatttggggggtggggtggcgggggtgcagtgttgccaaagtcCTCTCTTTTCTGGGTTCAGCCTTTGTCTTTTTACATCTCCTGGGTTTCAGCTCTGGTTATTCGAGCTGTTTGTAGGGGTTGATCTAGACTCAAGGGGGGCGTTATTTCACATTGCAAAGCCGCCACAGAACAATAtagtgatttgtatttttgttttaatgcttcACGGGTTCTGCTCATCTGAATAaaatggaggtgggggggagatGCCCTGTAGAATCTGGTCTTTGTTCATCGTGTTGGATATTGTAGACATAGTTATCGGTCTGCCCCATCTACCCCACACCTCCTCCTCGGCCCGACTCTCATAGGATcagagagtgaaggagaggtGAAAAGTGTACAAAATATGTCTTGTGTCTTAGCCATTTGGACCACCTGATAAGAAAAAACACTGCCGGTATGAAagtgtgtatttgttatgttttttctatCTTGTTTTGAAGTCgacactattaaaaaaaactatttttgacTAACCGTGACTTCCAAGATAATGTAAATTCGGGTTCAGATGTCTGCACTCGTGTAATAAAGCCGAAGATCAGTTTAAAGTctcttttattatgttttttatcatCAGAATATCATACTGACATGCTTTGACTCTTAACGGGCCATTAACTTGAATACCTTTTCCAGGTAGTTTTGTCCCAAATCAGTTATCCCcgaaaatagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggacgaCAATTTAAATTTTAACTAGTAGAGTAGTTTTCAGTTGACCCTTTCtacaattacagtactgtaattcCATAACAAGCCAATCTGGCTGCTAACGAGCCGTCTTCTGGAGGGAAATTCTCTAAACAgggaatgtttaatttaatcacagaCAGACTACACATTAAGAGCTTCCCAGAACTGTAGAagttaaaaattacaataaGCAGGAGAAAGGAAACCAGTTTCTATGAGGGCAACACATAGTATGAATGCAGAGATCGAGCTTTCATTTAAGGCAGAATATCCCCTCCCCCCCCGAACATTTACTGAATATATCTTTAAAGAATTTCCCTTCAGAAAAACAGACCTAGTACCACACGAAAAATCcacaaatacattcattttaaaattacaaaagatCAAGGATTATTGTAAAAGAAAATCCAATCGCTTTAAGACATCGTCACCGAGTTTAAGACATTACGTTTGTAATGAGCTTTGATGTCCAgtggggtttaaaaaaaaatggaatttaaaaaaagccacGCTGATAATGCTATCAAATCTACAGGTCAATATTGATCTGATGCgattaattacaaatgtaaagttcCCAATATTTAGAGAAAACTGAGGGGGTCTATGGAGATGCTAATTAAGTTCCCTTTCTTTCCACAAATTTTGATAAATTACTAAGTATAGCTGGTTCAGTCACAAGTTTTGCAATTTGCGCTTTGATACAATTGCAGATGCGATTcaggaattaaaatataaagtatgcAAAAGGGGTcagattttaaatttgaaaaaattaTTTCACCTACAAATAAAAACCCTCATTATAAATCATAGTTTAAATGATTTCTCAAACAATGCAATCCGGTGacattttacaatgaaaaactAACATCAAAgcttagagagagaaaaaaaaaactaaaaaaaaaaaacttgggaCTTATAGATTAGTCCCCCCATTTCAAAATCACATGACAAAAACCTGGGGCTAACATTTAACTCCCCACCCCTGTTTGGAAACCCACGTCAATCCAAAAGTCcgattttaatttacaaacccAATTCTGTTTTTTCTCGCTTTGGCTGACGTCTGGCAGCGTGCATGCGTGGAGAGGGGAACTGTGTCACTGGGAACGTGGCCCAGATATAAAGCTTTTTGTTAGGTTCAGTCCTCCCGGGTTGAGCACACTCTTTATAAATTGTTGAGCTCCAGGAGGGTCTGGTCCAGCACCTGGTGCATGCCTAGGTTCTCCTCCTTGGCATGGGCCAGTTTC
>TU102361
ctcaattctacactttttttttcaatgcatgCTGTACAGTTAATGTATCTTAAgaaagataatttattttcctttttctattttcagaCCATCCTCAATCCCCTTTACGAGGGAACTCTACCCCCTGCTTATATAGTCATGGTCTCAATGGGCATATGGGCTTTCTTCTCCTCCGGGGGCTCCGTGCAGAACCTGCAGTGCTTCTTCACATGTAGTAAAAGCGACGTGGATTCACAAGTTACTTCTTAACGCGGACATCCCGTCGATGCGGTGTCACTTTTGGGCAGACGATCCCACCCGGATTTCCCAGGCGTTCCTGCAACGCTCTGGAAGAAAACGACACCAAGCAAACTACAGGAGGGGGGGGCTGTGGACGGGCAGCCGCATGGACCCAACGCTCCTCCCTGTCCGGAGAACATTGCTCGAGGGATGAGTCATCCCGTACACATCGTAAATGGACTCGATCTCTTTTTATGCCTTCTTGTAATcctgagagagtgagtgagtgaaacGGATCCAAAAAGAGAgaactgttttaattttttcctaGTCTTTTATTTGGAGTAGGGCTGTACTAAACGTcatctgttttctttgtatttttttactatatGATGAGTGTGAAACGGGAACAGTAGCTTTTATAATCCTTCTTTTACAAGGATGCTTTTCAGTTTATTCTCCCTTTCAGCCCAAGGATTTGATTCATATCGTgatttggggggtggggtggcgggggtgcagtgttgccaaagtcCTCTCTTTTCTGGGTTCAGCCTTTGTCTTTTTACATCTCCTGGGTTTCAGCTCTGGTTATTCGAGCTGTTTGTAGGGGTTGATCTAGACTCAAGGGGGGCGTTATTTCACATTGCAAAGCCGCCACAGAACAATAtagtgatttgtatttttgttttaatgcttcACGGGTTCTGCTCATCTGAATAaaatggaggtgggggggagatGCCCTGTAGAATCTGGTCTTTGTTCATCGTGTTGGATATTGTAGACATAGTTATCGGTCTGCCCCATCTACCCCACACCTCCTCCTCGGCCCGACTCTCATAGGATcagagagtgaaggagaggtGAAAAGTGTACAAAATATGTCTTGTGTCTTAGCCATTTGGACCACCTGATAAGAAAAAACACTGCCGGTATGAAagtgtgtatttgttatgttttttctatCTTGTTTTGAAGTCgacactattaaaaaaaactatttttgacTAACCGTGACTTCCAAGATAATGTAAATTCGGGTTCAGATGTCTGCACTCGTGTAATAAAGCCGAAGATCAGTTTAAAGTctcttttattatgttttttatcatCAGAATATCATACTGACATGCTTTGACTCTTAACGGGCCATTAACTTGAATACCTTTTCCAGGTAGTTTTGTCCCAAATCAGTTATCCCcgaaaatagtttaaaaaaaaaaaaaaaattgtgtccTCCACGATTGGATAACAATTTCTCTGTACAATGAGGCTTCTGAAAATACTTCCTCAACCCAAATGGAAGGGAAAGAACAGGCAGGATATTACTGACGTGGAGGGTTTGAGGTTTTGTCCTTCATCGGTGGACTTGACAGGCAGTGTGTGATGGTTATTTTCCTCCGTTCGGTGTTTCTAGTGATCATGTCTGAGGTCTGTAATGCTCGGTTTTCTAGAGCAGTTATTTAGGCAGAAATCAAGCAGGTTTCGGAGTGAGAGTGTAACGGGAAAGGAAAATGcagattaaagtattttataataatatctTCAGTTGTCCCATCTTTGGTTAGCCCAGTCGCGATTG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU102360 True 2758 lncRNA 0.40 3 37499117 37520738
TU102361 False 1807 lncRNA 0.42 2 37499117 37501058

Neighbor

gene id symbol gene type direction distance location
AMCG00010626 NA coding upstream 4377 37482438 ~ 37494740 (+)
AMCG00010627 NA coding upstream 17237 37474910 ~ 37481880 (+)
AMCG00010620 NA coding upstream 98318 37394062 ~ 37400799 (+)
AMCG00010621 NA coding upstream 105910 37388703 ~ 37393207 (+)
AMCG00010622 NA coding upstream 132625 37363078 ~ 37366492 (+)
AMCG00010634 ankrd55,LOC107578565 coding downstream 248041 37768779 ~ 37781102 (+)
AMCG00010635 NA coding downstream 274791 37795529 ~ 37809247 (+)
AMCG00010636 NA coding downstream 344324 37865062 ~ 37873485 (+)
AMCG00010641 LOC106571427 coding downstream 440014 37960752 ~ 37971680 (+)
AMCG00010644 LOC108427269,LOC105894604 coding downstream 489321 38010059 ~ 38025329 (+)
G82059 NA non-coding upstream 1001 37497742 ~ 37498116 (+)
G82053 NA non-coding upstream 43829 37451121 ~ 37455288 (+)
G81990 NA non-coding upstream 231770 37266762 ~ 37267347 (+)
G81983 NA non-coding upstream 245489 37252167 ~ 37253628 (+)
G81954 NA non-coding upstream 385936 37112975 ~ 37113181 (+)
G82057 NA non-coding downstream 5345 37526083 ~ 37533144 (+)
G82063 NA non-coding downstream 33715 37554453 ~ 37556601 (+)
G82092 NA non-coding downstream 137569 37658307 ~ 37661155 (+)
G82140 NA non-coding downstream 222787 37743525 ~ 37743731 (+)
G82156 NA non-coding downstream 304959 37825697 ~ 37825916 (+)
G81987 NA other upstream 235068 37261324 ~ 37264049 (+)
G81971 NA other upstream 247948 37230428 ~ 37251169 (+)
AMCG00010585 NA other upstream 1404620 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 1419225 36077113 ~ 36079892 (+)
AMCG00010563 cdc42se2 other upstream 1972893 35480800 ~ 35526224 (+)
G82192 NA other downstream 365482 37886220 ~ 37888163 (+)
G82236 NA other downstream 648418 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 726283 38247021 ~ 38252010 (+)
AMCG00010655 NA other downstream 827540 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 846931 38367669 ~ 38372651 (+)

Expression


Co-expression Network