G82057


Basic Information

Item Value
gene id G82057
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37526083 ~ 37533144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102362
AAGGTTTCAGTCATTTATTACAGAAGAACAAAGAGggggaaagagaaacaaaaggagaaagaaaaacactgaaatcatTCAGGAAAAGAAGCGGTCAAAGGTCTGTCAACATCCTAGGGCTTTAAAGCAAGTGAGTGTATTGTAAACGTCTGCAACAGCTGTGACGGCACTATGTAAAATCAAAACTGACCGACTGAAGACTATGTAGAAAATATTGTAGCATAGTTTTAAGATCTACAATACAGAATTCTGCCTGCTGAACTTCCACAACAGGAAAACGCCGGTTCATTTCCACATCGCAGCTGCAGTGAACATAAGCCTGTTCAGCAAGACGAGATGCACTGGAAGACGCCTTGTaagatgaatgaaaaatgttgaCAGCCCCCTGCCTGCCCTCCAGACAAAAACAGAGCtataaacacaatgtaaagtcGGTCAGAAGGAACATCGAGAGAGGGAAGCTCCGTGGGGTTTGGGGTTTCTGTCAGGGAAGATTGGCCTTCATATTTAAGCGATCACAGTTCATCTGGGAAGAGTGGGAGGGAAGTGGCACCGAACAGATGGCGAGAGCAGGGATCTGAACTAGCTGAGGCAAAAGGGATTTGGAAACATGGCAGTTCTTACAAAATGATACATTCTGAAAGAGAGGCCAACAAAAGTAACATCGAGTGTTCGATCAATATAAATGGCTCAATTAGTTTCCTAGACTTCTCCGTAGTGCCTAAAGTTTGCTCGTTTGGCGCATTTCTGAAGGTGGGTTGTAAATGGCTAGTCAATCCGATTAGCTTCTAGAAATGCAAATCTAGCCAGAATACCTTCATATAATAGATTTAAACTCATTCATAATAGTGTGAGAGagaatttacattttccttacTCTGAAAGGGTTTAAAAACACTGTGCTAAACgatgaaaacactgaaatgaataaaaaattataaGTGGAGAAggacaaccccccccccccaaggaGCTGCCGATCATGAAGTAAGAGATGATGCAGGAGGATAAAATGAAGAGGAGGGGTGCCTAGAGAGTGGTCATGTCATTCAGCGCATTGTCCAACTCCTCACTGATGGCTTTACCCTTCAGCTTCTGAGAGTACACCTCGTCTGCAGAGTCCCAGGGCAAAGCAGAGCGTGGGGGGGGACAGTGCGGAAAGAGATGGCAGGAAAATGACAAGACGAAGACAGTGAAATGGTACAGAACACAGCGAGGGgtggaaaaagaggaaaaacaaagtcAGAGTGAACAACTCCAAGGAAAAGgtctacaattttttttaactaggcTCATAGTCCAAGTGTAGTTTCTTCAAGTTCTTTGCACTTATTGGTCATTTATTGGTCTGTTCGCTTTTTCAGAATACAGAACTTTGATGCTGTCTGAGGAACCGACTACCAGCCATGTTATTTAGAGCCAATTCTTCCAAAATTAGACTGTGCATAAGCTACTAAAATCTAATGTGAATACTAAGCAGCTGTCCAATACTGCAAGTTAAAATGCCCATCGATCACACCATTTTATCCAATAATAAAAGTGCAAAGAACACAAATCCCACTCACCCAAGAGAAGCCGACAATGTGCAGACTATTTTTAGCACTAGCAGGTCAACAGCATTACATTCGgatgcaaataaatattctcTTGAGTAGGACTATTCTGCACAAGTCACTGCCAACGTATCTTTGGGGAAGTGGGTCTTACAACACTATCTACAATTAATCTCATCCCTATACAAACCAGGCCTAGAAGGTTGTGTGGGTTCTTTAACCTTAAAGTGCAAAACTAAAACCATGccacagcacaacacaatgaCCTCCATTTTGGATCCCAAGACCATGAGTGACAAAACTCATTAGAGGTTAGAATAGTCAGTTTAGCACTCTCGAAAGGGGTCAGTTTTCCCAGCAAACCTTGACATCACCTagtgtgtgaaataaatgtcCTAAAAGATACATTTACATCGGCATTTCCCTGACTTCTACCCATTTCTGACGGATATCAAAGGATATACTTTACCTCTTTGCTACTGCTAAGCATTCTTTCACTTCAGAAACCGCTTAATTGGAGTTGAGATGTGAATGATACAGTAGGTCAAGGCAATTAGTGGATCATGTGCAAAATTACAGTCAAGCGTCtaaatacattgtacaatgaaATAGGGAAAAAATGTAACAAGCAACCAATCTCGGTCAAGAGTTTCTCATTAAAATCTGTCCCAGAATACAGGATGTAGATTAATATGGAACAGCTATGACTAAGTGTGCGCACGTCTGCAGTATTGCATTAAAATCACTATAAAAggtggttaaaataaataataaaataagaagcgCTGGCAAATCAATTCTTAGctgatattaaataattttatactAAATTTACATCAAGTGAGATTCTGTATACCTCCTCTAACTGTTGGCAAACAAGAACCACCACACTAATATACATATGAAGCCAAAATATTGAGTAGGTTTTgaacttttaaatgcatttacaaatctaatgaacccccccaaaaaagggaCTCAAGGTTTAAGGGAAACAGCCTTagtaaacttttaaaatctgcGAGTAAACATCAGTGAATGAAATGTAGTCCGTACAGAACACGCTTCAACAAAGCATTTCATAAAAGCTCACGTGTATTAGAGTATGGTTAAGGTTATTGTTCTGGTTAGATGTCGATCAGCAGACTGCAACCGGACATACCAAATTAGagtcaaacaaaatgcatgcatacCTTCCAAGTCATCAATGGTCTTTTCAAGTTTTGCTACAGATCTCTCTGCAAACTCAGCACGGGTTTCAGCCTTTTAAGCTTATCTGTTAGAAGTCTGATTTCTTCTTCATATTTATCCTCCTTTTGTgaatactaaaaaataaatttaaatgttatgaacACAATCACTTGCATAACTTTGCTCTCTCAGATATTCAAAATCAATCTTGCGCTAAAtgatattcaatttaaaatgtcttctgcatgcttattaaatgtatatatatatataagtatataaatgtaacttCTTCAACATAGGACTCTAGAAGGCACTACCAAACTAACTAGGATTCAGAAGATAATCACATCCAAGAACAAAATGAGTCTGGCTTAACACTGTTGCAAATGTGTCTCagtaaactatacatttaaagagAAGCCCATGTAAGGCATAAAGTATTACATGTGTAGAATTGCAACACAATGACACAGAAGGTACTAGAGATGAAAGCCATGTGCAATGCTAATGCTAAAGCTAAAGCAAAGAAGCAGGGAAAGAGGAGAAAGCAAGATGTTTTCTCTGTACAAACGGGGGTATCCTAACGGGAATCCTTGGAGAATGAGAACAAAAGGCCAGCTCACATTCCCGTCACCTACTCACTGGCGACAGCACAATGGGAAGAAAACGCCGAATTGTAAATCGGCCTGGAAAGGAGCAGAGTGCCTGAACGCTGGGGACCCTACGGTTCTTCCAGCCTGTGCAACTGATCTAAGGTTTGCCACTTTCAGACCTTTGTACTCGAGTCAACaatgttttacttcattttttttgtttgttgtgctgCGGTTAACAGTACTTCTGAACTATGCAAGATCTGATCATTTACGgtaatttaaattgtacattttacatgatgAAATATCCTTGTTTTACGGAAGGTGCCCTGGCAGCCGCACAGCTTTACCATCGGCAAAATACTAATTTGCCTTGTTTAATTACACAATAACCGTTGATTTTGGAACTACCAGATTACAAATTGAGACTTTATACAATGCTGGGGAAGAAAGGACTTTTTGACTGCAACAACTCCTAATTTTCCGTGAAGGTTGTTGTTACTGCCTAATTATCAGTGCTTCAGTTTCAGAGTTACTATGACTCCCACGGTTTGGCTCTGGCAGTGGGCGTTTTGCAGCCGAACAGCAGGTCTATCGAGAGCGAGAGGCTGCTAAGCGCCTTTTCTGTGACAGTGCGAGGGGATCCATCACACAGCTTGTCCCATACCTTCTCAGACTGGGCTTCCAGAGACTTCAAGTTGTTGGTGACATTTTTCAACTCTTCCTCTAGGTCACCAGATTTACTGTACAGCAGCAAGAGAAGTGGAAAACGGGAGgggaaggaagagagagggagttgagaagatggagagagagcagcGAATGccggaagaaaataaaaaacccaTAGCAGACCTCGGAGATGGTCAAGCTGCGGAAGTTGGTCAGCAAGGGAAACCAACACTGTCTTGGTGGAGACGGCTACATGTGGCTTTttggagagatggagaaaacTTACCTGCACACCATGCAAGGGGGCTTAAACAAGTAACAACCGAGTTTTTAAAAGGCTTTCAGAAAGGCAGAGACAAAAGAGAATGACCCTTGGTGGAAAAAGTATCAAATTACGCTTCCCTTCAATGCCAAATTAACCTCATAAGTGAAAGCATTTCTCTTGGCATAAACTGCTTCCGACTGGAAGCAGTGCATGAAATTATATAAAGCAACATTACCCAAGATTAATTTCCTCCAGTGATAAAATGCTTGCACCGACACGCATTCGTTtgcaaattaattgtaattaaattaaaaatcaatgccTTTTCAACAGTAAAGGAGTAAAAGCAAGTCCTAcatctataaaaacaaaacaaactgacaccTGGATTGTGAGATGCGAAAAAATTAAACCATCATGGTCATGAGAAGCAGGACAGCCAGTAGGATATAATTGACAATGACACTAGAAACTTCTTCTGTAAGTGTGCGAGATATTTCACACCAAGGGTCTCATCGTTTGCCTGCGACTTCTTTGCCGTGGGCCTCCACAGGGTCAACTATGCTACAGCAAAGCAAGCAGTGGTCAAAGAAACCCCGAGccccccaaataaaaaaagtgagAGCTGGCTAAGCTGCAGAAGAagtcttttttttgggggggtttcaGTCGCAGGAAACCAATAGCATGAAGGGCAGAGGAAGCAGGAATCCGAACTAGCCAGAGGAAAGGAACCATTAGTGACACATCGGAGGTGTTGTGCTAGGCTTGGGCAGTACCTCTTCCTCTGTGGACATCAGGGATTTGAAACTCTGGTCCATTAGTCTAAGCTCCTCTTCCAGCTGCCTGACTCGACTGAGTTAGTCCACAGCAAAGGGGAAGGAGCGGCCAAATGTACATCCCGGGGGAGTGCATTCACGCATGCATTACCAAAAGGGGAGACAAAACCAAGTGCCCTGCTGCAGTTAGTGTATCCAACATCTCTTACTTTAGGTTAGCACTTTCTGGGGGAAATGGGGACTGGAATGACCATACGTTGGACTTAAAGATGCTACTGGAGGAATTTACGTCGGCACTGTGTATAAATTCAGTGTGGCCATCTCTTTTGGAAGTGGAGAATAATAAAACCCCAGGAGCAAAAGCTCTAGATGTACAGTGGCATTCCTTAACCAGTAGATGATTTCTTACGGTTTGTGGACTGTGCATAGTCCGGGGTCATTCAAGGGTAGCTGAGGTTAGACAACTTGCCGCTTCATAGAATCATTTCAGTCCCCACGATACACATGCAAAACCACTTACGGCTCACTTTCCATTATgttcatgcaaaacaaaaccttttataCTTTCATCATTTACAACAAAAGGATATCCATTTAGAAACCTAACCCGAGAtcccaacacaacacaagccATGAAAAACCCAGCAAAAGTCACTGAACTATTTTGATGGAcctgcaaaaatgaaaacatgttatcttcaagtgcttttaaaacataactTGTAGTATTGTTCATCTCATCTAACTAGCTTTCATACAGGCATACATGGTGTTATTTTGTCTGATTGTatcatgcatacaaaataaacacatctctCTCCTCTAACattgaaagttttattttagaaaagttCTCAAAcaccacattttttaaatccagttttgAGACAGGGATAGTGCCAGTATTTAGTTTAATGCCACTAAAATATTTCACCCAATTGATCTTAGTATCACTTGTATATTTGAAAtcacaaatgtgcatttttcGATTGGCAAGGGTGACAGAACTGCTGGTACAATTCCAATCTGTGGTAAATGAGGTCTGATCCAAACTTTATGGACGGCAACACACCACTGTGCTGTGACACTGCACTGCAAAGTTGTCAGCGCAAATTATTAAATCAGGAATGCCCCAAGACAACTTCTAATCATGCcccgtttttctttttctagtgGGCCGTCTAAACTGAGCCTCATTAAGTTCTTCCACTAGATTGCACCACCTTTGTGAGATTTCCTGGGCAGTAAATCTGCTGCAGCAGGGCTGTACAATGACTGGTCTTtatgagagagagcaggagatgAAAGGTGTAAATGAGGTTGTGACGGTCTggataagaaaaaaattaaataaaatccccCAAAATGTATTTCCTATTCAAGAGACAAAAAATGTTCAgtgtcagttattttattatttttaaagcaaagattAGATCTGAAGTGACTCCTGGGTCTACAGAATATCTAGCGTGATGAAACTGGGTCACTCTCACCATCTGTAACTCACTGCAGTTCAGAGAGTTAGGGATGACCTGAGTGAATGCAGGTTTTGAAAAGGCTCCCTACCCCTCTCTGATTCTACCCATGTGAGGAAACGCAGAGATGAATAACAGGTTACACTTACGCCTCGGCCACCTCGGCGCGCTCCTCAGACCGCTCCAGCTCTCCCTCCAGAATAACAAGCTTCCGGGCCAC

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU102362 True 6757 lncRNA 0.41 2 37526083 37533144

Neighbor

gene id symbol gene type direction distance location
AMCG00010626 NA coding upstream 31343 37482438 ~ 37494740 (+)
AMCG00010627 NA coding upstream 44203 37474910 ~ 37481880 (+)
AMCG00010620 NA coding upstream 125284 37394062 ~ 37400799 (+)
AMCG00010621 NA coding upstream 132876 37388703 ~ 37393207 (+)
AMCG00010622 NA coding upstream 159591 37363078 ~ 37366492 (+)
AMCG00010634 ankrd55,LOC107578565 coding downstream 235635 37768779 ~ 37781102 (+)
AMCG00010635 NA coding downstream 262385 37795529 ~ 37809247 (+)
AMCG00010636 NA coding downstream 331918 37865062 ~ 37873485 (+)
AMCG00010641 LOC106571427 coding downstream 427608 37960752 ~ 37971680 (+)
AMCG00010644 LOC108427269,LOC105894604 coding downstream 476915 38010059 ~ 38025329 (+)
G82056 NA non-coding upstream 5345 37499117 ~ 37520738 (+)
G82061 NA non-coding upstream 15251 37510231 ~ 37510832 (+)
G82059 NA non-coding upstream 27967 37497742 ~ 37498116 (+)
G82053 NA non-coding upstream 70795 37451121 ~ 37455288 (+)
G81990 NA non-coding upstream 258736 37266762 ~ 37267347 (+)
G82063 NA non-coding downstream 21309 37554453 ~ 37556601 (+)
G82092 NA non-coding downstream 125163 37658307 ~ 37661155 (+)
G82140 NA non-coding downstream 210381 37743525 ~ 37743731 (+)
G82156 NA non-coding downstream 292553 37825697 ~ 37825916 (+)
G82228 NA non-coding downstream 554249 38087393 ~ 38093714 (+)
G81987 NA other upstream 262034 37261324 ~ 37264049 (+)
G81971 NA other upstream 274914 37230428 ~ 37251169 (+)
AMCG00010585 NA other upstream 1431586 36091539 ~ 36094497 (+)
AMCG00010578 NA other upstream 1446191 36077113 ~ 36079892 (+)
AMCG00010563 cdc42se2 other upstream 1999859 35480800 ~ 35526224 (+)
G82192 NA other downstream 353076 37886220 ~ 37888163 (+)
G82236 NA other downstream 636012 38169156 ~ 38169531 (+)
AMCG00010648 NA other downstream 713877 38247021 ~ 38252010 (+)
AMCG00010655 NA other downstream 815134 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 834525 38367669 ~ 38372651 (+)

Expression


Co-expression Network