XLOC_006058 (dnajb12a)


Basic Information

Item Value
gene id XLOC_006058
gene name dnajb12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30035253 ~ 30046753 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011954
GTTAAACAcgaattattattttacatttttaattgtattcaCTTAAATGTACTTACTCAATTCAAATACCATTATTTGCGCGTTTAAAACCAACAGAGCTAAAGGGTGGACGGACTATTCACTAGTAAAAAACTCTTGACGTTGCTAAAACGTCATCAAGCTGCGCCTTTGCGTCAGGAAAGCGATCAGTCATCAGTTCCGCCGTCAAAATGGACTCAAATAAGGACGAAGCGGACCGCTGCATCGAAATAGCGATCGCAGCGCTGCGGGATAATGAACAGGACAAAGCCAGACGGTTTCTCGAAAAGGCACAGAGGCTGTTTCCCACCGACAAGGCGAGATCTTTATTAGAGTCTATTATCATGAACGGAGGACCTTCCACAAGTGAAGAAAACAATGGAGAACCTCATGGTTTACGAAATAGAAACCACAAAACGGAAGACCAGTCCTCTGGTCATAGTGCCACAGAATCAGCCAAACCTTACACATCAGAGCAGCTGGATGCTGTCAaaagAATAAAGAGATGTAAGGACTATTATGAGACTCTTGGAGTCAGTAAAGAAGCCTCTGAGGAGGATTTGAAAAAAGCTTACCGAAAATTGGCTCTGAAGTTTCATCCAGATAAAAACCATGCACCTGGTGCCACTGAAGCATTTAAAGCTATAGGTAATGCGTACGCAGTTCTTAGTAACCCTGAAAAAAGAAGGCAGTATGATGTCTACGGTGAAGAAAAAGCTCACCCTACTCACAGGCACAGGACCTATCATAGAAATTTCGAGGCAGATATTTCCCCTGAGGATCTGTTCAACATGTTCTTCGGAGGTGGATTTCCAACCAGTAATGTTCACGTGTATAGCAATGGCAGGATGAGGTTTGGCCATCAACAGCGACACGAACGACAAGAACAACAGAGAGAGGGCGGCCTTGCATTGTTTGTCCAGCTGATGCCCATACTTATTCTGATAATAGTCTCTGCTCTCAGCCAGATGATGGTTTCCAGTCCTCCATACAGCCTCAGCCATAGACCATCCCTGGGCCACACAAGCAGGCGACAAACTGCTACTCTGAAGGTGCCTTACTATGTGGGCGACCACTTCTCAGAAGAATATAAGGGGATGAATCTCAAGAATGTTGAACAAAGTGTGGAGGAGGACTATATATCCAATCTGAGAAACAACTGCTGGAAGGAGAAACAGCAAAAGGAAGGCTTGTTGTATCGGGCACGTTACTTTGGGGATGCTGACTTGTACCAAAGGGCGCAGAAAATGGCGACACCCAGTTGCTCTAAACTTTCAGATATACAGGTTGTGTTACACGGACACTGAGTAGCAGAAAGTGAGTCGATGCTTTTACTTTTCTTCTCTAAATGTACAGTTGTTTATTTTCTGCTTTCTTTTCTCTGAGCAAACACTTTGGTTTACCGTTTCAGGTAGTGTCCTGTCATGACACCATTTTCACGATGATCGTGTACAGAAAAGTTCTGTTCTTCATGCTAAAATGGGACATTTGCATTGCACCAGTTCAAGAAAAGCAAAGAAAGCTCATCCTGGTGCCACAAGAGTTCACTCATCTCTCCTTCCAAATCTGCAGAAAATCCTTAAGATCCTTGAAAACGGCTTTAAATGCGGATTTATTAATGAAATTGTTTAAGAATTTATAATCTGATGACTTGCTGGTAGAGAGGGAAGTACACCGCTGTTAAATGGTAGTCGATGCTGCTAGCTTACTGCTTTGTCTTTTTTATCATTTACACCTCTTTTCTTTTTGAAGCATTTTTTCAACACCCTTGTTTGGGTTTTCTGAGCCAACTCTGACGTTTCTAGTAGTGTTTAAATCTATTATCTGACCACAGAAATATAAACGATATGTAGATTTCATTCAGGACTGACCGAATTGTTcactggatttttaaaaaaaatgtttgagatttatgaaaatggaaattaatatttgtatttattaaattgtgtCATActattttcttccattttttaaatttattttgttagaaTCTTTATAAGcatacattttaattgtttatttgcaaACTTTTTCAAGTGCCTTGCCAGCTCCAGTCTTACTGTATACTGCAAGTCTCTGCATAAATGTAATATAGGAAGGAAAAACATCATTGCTTAAACTACTAAAATActaatttttatttgctttttttttctttcagttgtTTGATTTTATGAttttgcatgtatgtatgtaatgtaatatagttaCCCAACACAGAAatgaacaatacaaataaattttcttttaaaaaacaaaaacaaatttacataattatgtttaatttattactGCAAGCTGttaggttttttttatttgtttttttgttttattttgtttaaagtgaTTAAAAGCAGTCATACCTTTTACTTACTTTGTGTCTATTCGAAAGATATTCATTCACAATTCACACATCTAAATCAAAGAATATTTGTAATGAACGAAACTGAGCCAAAATGAATAGTCTTAAACTGATAATTAAATTATGtaatcaggcctgtagccagggagTTCGGGTGGTTCGAATGACCCACTCCTCTCTAACAcgggtccagaatttgtcccatgcaTGAGCTCATTTGTTCTTTTTTGACCGCTATGCCATCACAAGTTGTGTATATAACTCATCGAAAATTATTATTTGGCTAATAAGTGACAAGAGGCTActtgacctttaaaaaaaaaaaaaaaaaaaaagacctaagttttttaatttagaaataacatttttttctaatgatatttttcatatttccttattctaaatatttaggaaatgtATTTAGTACATCAAAAGGTGTAGTTAAGATGACCACCCGACAAgctaatcaacaacaacaaaaaaaaaaagaagtgctaAACAGTgactaaaatgcaatatttaatttatatacttAACTTCATTGTTAAATACAAAATGAGTTGAATGACTGCAAAAAGTCCACTTTTTGAGGGAAAACCCCATGCCTTTCATTAGCTTGGCCACAGGCCTTTGTAAATCTTCAAGATGGTTGACAACTTGAGGAACACTTTTGGTAAGTGTGTTGTCTTTAAAAGGATGAGGAAAGTATGTTATAAATCATTCTGAATTAAATTTTAAGTCTCAATATACCAAAGAAcagtattttatcatttaaatctGTTTGAGAACATTGCCACTATTGTTAAGGTCATACCAAGACCacatttattttactaaaaaatTACAGCTAAACATTGCTTTGAAGTAGTTACGTTTACCGTTAACACTTTACAACGATGTTCTTTGACTAAATGTGTTCATTACAGTATACATCTTCATTTATGTTAATGAAAACAAAGTAACTTTGTTACTACATTATTACTTATGTTAACAAACACTTTATGACTTTTTGCTAAACTAGTGAATGGTGAACTATCTAAATGAACTATTAACTAATAAATTCTTTGCTAGTATCATTCTTAGGTCATGTTAATATACATTAATGGAAACGTAGTTATCCAATTTTCCATTGAAATGTCAACTGAGGGAAACAAAAACGCTTGTTtgtgatgtttaaaaaatatttttattattaaaattgcatGCATTTTACCGAATGAAAGAGGAAAAagagtgttttaaaaaatacattaaagatGTTTTGTTAGCAGTCTTACACCAGGAGGCAGTCATGAGCTTTGCCACTTGAAACCACTGAAGAAATGGACGTTATTGTTTAATATTCGTGTCTATCACACTGGAAAACAATATTCAAACATAGAACACAGAAATGTACATTAGTATCAGTGATCTTGTTGCTAGGATTTCATTGTTTCAGGCTACAATAACAAACCTCGTCCACAGCTTATCAACAATGGGCATTTGTATAGCAATGCTCAGGTAAGATTTGACCTTTCAACACTGAAGAAAACGTTTTTATTAGGATGAAATTCAGAAGGATTGAGGAATACTGACTGATGCAGACAGATTTAGTGTTGTTGGTCAGAGCTGCTTTTCACTTGTTTTAATGGCCAACACACAGAGAGGAGAGGAGGAGCAACACGACAGTCCCTGGACTGCTTTGAGGAGTCAGTAGCCATAGAAACACCATGTTTTTTGGGGAATAAAGACAGTCTTCTGTTTTGTCTGTGGTCACTGATGGTTGAAGTCCTGAAATCATTATTATCTTCAGACATAGCCTATCTGACTGACTAGATATTGCATTCCCATAGTGCGATTTGAACTATAACACTAATTAAAATGCCTGATTTTCACACTAGATTTTGACGTTGCTGTTTGTTGTAAGGgttaaataagctaaaacaaaagTTAAAGGTTTGGATTGCTTTCTTATAGAggttttaaaggggtagttcacccaaaaatggaaatttattcaatttacttgTCACAAAtatcattttttctttttatacacaAAACCTGTTAGTATCAATTTCCATACTGGACAAACACgtactatggaggtcaattgttacaggtttctTAAACTTTtcttctccttttgtgttcaacagaaaatggAATCTCATAAAGGTATGGAACCACCTGAGGGAGagcaaatggtgagtaaatgtaaattatttaacaGTGCTCATAAATGATTTACTCTTAAATGTCATCGAATTCATACTGTAATA
>TCONS_00011955
GGACTATTCACTAGTAAAAAACTCTTGACGTTGCTAAAACGTCATCAAGCTGCGCCTTTGCGTCAGGAAAGCGATCAGTCATCAGTTCCGCCGTCAAAATGGACTCAAATAAGGACGAAGCGGACCGCTGCATCGAAATAGCGATCGCAGCGCTGCGGGATAATGAACAGGACAAAGCCAGACGGTTTCTCGAAAAGGCACAGAGGCTGTTTCCCACCGACAAGGCGAGATCTTTATTAGAGTCTATTATCATGAACGGAGGACCTTCCACAAGTGAAGAAAACAATGGAGAACCTCATGGTTTACGAAATAGAAACCACAAAACGGAAGACCAGTCCTCTGGTCATAGTGCCACAGAATCAGCCAAACCTTACACATCAGAGCAGCTGGATGCTGTCAaaagAATAAAGAGATGTAAGGACTATTATGAGACTCTTGGAGTCAGTAAAGAAGCCTCTGAGGAGGATTTGAAAAAAGCTTACCGAAAATTGGCTCTGAAGTTTCATCCAGATAAAAACCATGCACCTGGTGCCACTGAAGCATTTAAAGCTATAGGTAATGCGTACGCAGTTCTTAGTAACCCTGAAAAAAGAAGGCAGTATGATGTCTACGGTGAAGAAAAAGCTCACCCTACTCACAGGCACAGGACCTATCATAGAAATTTCGAGGCAGATATTTCCCCTGAGGATCTGTTCAACATGTTCTTCGGAGGTGGATTTCCAACCAGTAATGTTCACGTGTATAGCAATGGCAGGATGAGGTTTGGCCATCAACAGCGACACGAACGACAAGAACAACAGAGAGAGGGCGGCCTTGCATTGTTTGTCCAGCTGATGCCCATACTTATTCTGATAATAGTCTCTGCTCTCAGCCAGATGATGGTTTCCAGTCCTCCATACAGCCTCAGCCATAGACCATCCCTGGGCCACACAAGCAGGCGACAAACTGCTACTCTGAAGGTGCCTTACTATGTGGGCGACCACTTCTCAGAAGAATATAAGGGGATGAATCTCAAGAATGTTGAACAAAGTGTGGAGGAGGACTATATATCCAATCTGAGAAACAACTGCTGGAAGGAGAAACAGCAAAAGGAAGGCTTGTTGTATCGGGCACGTTACTTTGGGGATGCTGACTTGTACCAAAGGGCGCAGAAAATGGCGACACCCAGTTGCTCTAAACTTTCAGATATACAGGTTGTGTTACACGGACACTGAGTAGCAGAAAGTAGTGTCCTGTCATGACACCATTTTCACGATGATCGTGTACAGAAAAGTTCTGTTCTTCATGCTAAAATGGGACATTTGCATTGCACCAGTTCAAGAAAAGCAAAGAAAGCTCATCCTGGTGCCACAAGAGTTCACTCATCTCTCCTTCCAAATCTGCAGAAAATCCTTAAGATCCTTGAAAACGGCTTTAAATGCGGATTTATTAATGAAATTGTTTAAGAATTTATAATCTGATGACTTGCTGGTAGAGAGGGAAGTACACCGCTGTTAAATGGTAGTCGATGCTGCTAGCTTACTGCTTTGTCTTTTTTATCATTTACACCTCTTTTCTTTTTGAAGCATTTTTTCAACACCCTTGTTTGGGTTTTCTGAGCCAACTCTGACGTTTCTAGTAGTGTTTAAATCTATTATCTGACCACAGAAATATAAACGATATGTAGATTTCATTCAGGACTGACCGAATTGTTcactggatttttaaaaaaaatgtttgagatttatgaaaatggaaattaatatttgtatttattaaattgtgtCATActattttcttccattttttaaatttattttgttagaaTCTTTATAAGcatacattttaattgtttatttgcaaACTTTTTCAAGTGCCTTGCCAGCTCCAGTCTTACTGTATACTGCAAGTCTCTGCATAAATGTAATATAGGAAGGAAAAACATCATTGCTTAAACTACTAAAATActaatttttatttgctttttttttctttcagttgtTTGATTTTATGAttttgcatgtatgtatgtaatgtaatatagttaCCCAACACAGAAatgaacaatacaaataaattttcttttaaaaaacaaaaacaaa
>TCONS_00011956
TCATCAGTTCCGCCGTCAAAATGGACTCAAATAAGGACGAAGCGGACCGCTGCATCGAAATAGCGATCGCAGCGCTGCGGGATAATGAACAGGACAAAGCCAGACGGTTTCTCGAAAAGGCACAGAGGCTGTTTCCCACCGACAAGGCGAGATCTATAGGTAATGCGTACGCAGTTCTTAGTAACCCTGAAAAAAGAAGGCAGTATGATGTCTACGGTGAAGAAAAAGCTCACCCTACTCACAGGCACAGGACCTATCATAGAAATTTCGAGGCAGATATTTCCCCTGAGGATCTGTTCAACATGTTCTTCGGAGGTGGATTTCCAACCAGTAATGTTCACGTGTATAGCAATGGCAGGATGAGGTTTGGCCATCAACAGCGACACGAACGACAAGAACAACAGAGAGAGGGCGGCCTTGCATTGTTTGTCCAGCTGATGCCCATACTTATTCTGATAATAGTCTCTGCTCTCAGCCAGATGATGGTTTCCAGTCCTCCATACAGCCTCAGCCATAGACCATCCCTGGGCCACACAAGCAGGCGACAAACTGCTACTCTGAAGGTGCCTTACTATGTGGGCGACCACTTCTCAGAAGAATATAAGGGGATGAATCTCAAGAATGTTGAACAAAGTGTGGAGGAGGACTATATATCCAATCTGAGAAACAACTGCTGGAAGGAGAAACAGCAAAAGGAAGGCTTGTTGTATCGGGCACGTTA

Function

symbol description
dnajb12a Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJB12 (DnaJ heat shock protein family (Hsp40) member B12).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030544 Hsp70 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2725 Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJB12 (DnaJ heat shock protein family (Hsp40) member B12).

Ensembl:

ensembl_id ENSDARG00000039363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011954 False 4644 mRNA 0.35 8 30035253 30046753
TCONS_00011955 False 2081 mRNA 0.40 9 30035364 30044395
TCONS_00011956 True 721 mRNA 0.48 6 30035442 30043337

Neighbor

gene id symbol gene type direction distance location
XLOC_006057 cuedc2 coding upstream 98994 29925397 ~ 29936259 (+)
XLOC_006056 NA coding upstream 143433 29889189 ~ 29891820 (+)
XLOC_006055 pax2a coding upstream 229724 29770837 ~ 29805529 (+)
XLOC_006054 CT025909.2 coding upstream 279826 29755293 ~ 29755427 (+)
XLOC_006053 CT025909.1 coding upstream 444138 29590994 ~ 29591115 (+)
XLOC_006059 spock2 coding downstream 8243 30054996 ~ 30132256 (+)
XLOC_006060 eif4ebp2 coding downstream 116762 30163515 ~ 30168897 (+)
XLOC_006061 pald1b coding downstream 122480 30169233 ~ 30214368 (+)
XLOC_006062 qrfpra coding downstream 169012 30215765 ~ 30235220 (+)
XLOC_006063 AL929330.1 coding downstream 204988 30251741 ~ 30251857 (+)
XLOC_006049 NA non-coding upstream 585532 29446817 ~ 29449721 (+)
XLOC_006044 NA non-coding upstream 951962 29083087 ~ 29083291 (+)
XLOC_006065 AL844152.1 non-coding downstream 464854 30511607 ~ 30511723 (+)
XLOC_006067 NA non-coding downstream 630072 30676825 ~ 30677643 (+)
XLOC_006071 CR762493.1 non-coding downstream 789903 30836656 ~ 30836776 (+)
XLOC_006074 NA non-coding downstream 873801 30920554 ~ 30928661 (+)

Expression


Co-expression Network