G82250


Basic Information

Item Value
gene id G82250
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38285579 ~ 38287528 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102610
tatttatatagcaatTCCAATGCAATGACCCGGTCCCGATGGATCACACGCTTTTGCTTGTCTGGGAAGTGATTGGTTTTACAAGAGAGCTGGAAGAATTAGCAGGCTAAGAGAATGAGTCTGCTTATTCAAATCACTCGCCAGGCTGCTGAAGTGAAAGTCTATTCTCGTGTCTGCTAGCTGATCGCAACAGGTTTCCACCTGCATCATGCAGAGAGGATTTGCACTCAGTTTGCTCTGCTTTTCCAGTTCAAGGTTTAAAGCTGTGATCTGAGTATTGTATGTATTCTCAGAAGCCAGGGCTACACCTACACAGAAGACATCCTTTGTTGTGCCCTCATGTTTGTggtagtattttaaatgttttgctcaCTCAACAAAAATgggttattgttttgtgtgtgtgtttaactctTACAATTTACCTCTATAAATTGTAACCTAAGGCTCACAGTCTAGCATATCCCATTTACCTGAAAAATCCACAacagagtttttgtttttgacagaaCAAGTCATTAAAAATGTCTGAATTTATTGCCGGGACAGGAGTGCTTTGACAAGCTGCTGTCGTGTAGAAAACACATTTCCCCACCAAGAGCCTTATTGCCACGACTTTGAGTCGATTGTAACATTTAAGTTGGTTTGTGAGATGTGCATTTCTTTAATAATGCTTTGAGTGGGGACTGATGTGGATATTTCCCGAACAGTGCAAGTCAATTACAGACAGGACGAAAAGCATCGGAGAGATACTGCTCCTCTTCTTCACCGAGCAGAACAGAGTGAATGTCTGGACGGCTGTCTTAACATCATAAAAACGTCATTCAAACCTCATCAGAACGCAGTACAATCAGTTAAGGTTAAAACGAATGGGATGGCAAGGAGTTTGACCTGTTTAAAACGAGTGCagactttactttttaaagccTTAGGccttttttcaaaaacaaacctgtATCTGAGCTGATAGTAATGTAGATAGCTAGCTGTATAAGTATGGGTATCGAAGACGCTTCCtttgctggtttgttttccCTTTGCTTTGCGTTTGTCACGGCTTTGTTGCAACAGTGGGAATTTAGAAATATAAGTGTttgataatgataaaaaaaaatggtggtgAAAAAGAGATGTTTAAGTGTATTTTGGGGTTAAATGATTGTGTACTACATTAGCTTGTCCTCTTATAGTCCTAGAAAATATTAGAAGGCTTAAACGAGAAAGCAATTGTTCTGTAAACTAGCACTTTCTttaatgtgtgtactgtattagGTCATGTTCTACATGTTTGGTACTGTATGAATATTCATTAATTGCCTTGTAGTGTTTGTTGGTTGCAACATGTAGGGTAATTTTCTCCAAAATTcaaagtttttacattttgcatgtcAACAGTTAGTCcggtccaaaaaaaaaacagaaaaaatcgGTGCTACATTCTCAGATATAAAGGTGCTTATATGGACCCTAACTGCATGCATGCTGAcgaaagaaaaagattaaaaaaaaaaaaaaaagacttgaaaCTGGACATTTTGTTCACTCGCACACATAGTGGGAAAGTGACTTTGTGGGGCGCCTGCGCAGCTCCGCAGTCGATCCATCCATTCCGTTCCTTACAGCTCCCAAAACAACATTATCCACATCTGCGCAAGATCAGTGTGCTTTCTTACACACACGCTCACGACCGGTGCAGCGGAAagacttttgtattttgcaatgtgtgtgtgtggggggtgtaaCTTAATTACCGTAGAAGTGCTCTTTGATCTTCGAAGACGAACGCCATCATTCCATCATtgctcatttaaaacaaaagaagtCAAGAGAGCAGGTAGCTATGGCCGCAGATGTATTGTTTGGTGGGGGGAGGAACATACATTTCTTATGGTAGTATTTGTCCGCacatccattattttattttattttattttattttattgttcaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102610 True 1950 lncRNA 0.39 1 38285579 38287528

Neighbor

gene id symbol gene type direction distance location
AMCG00010650 NA coding upstream 7210 38277317 ~ 38278369 (+)
AMCG00010643 NA coding upstream 234632 38043745 ~ 38050947 (+)
AMCG00010644 LOC108427269,LOC105894604 coding upstream 260250 38010059 ~ 38025329 (+)
AMCG00010641 LOC106571427 coding upstream 313899 37960752 ~ 37971680 (+)
AMCG00010636 NA coding upstream 412094 37865062 ~ 37873485 (+)
AMCG00010652 NA coding downstream 18726 38306254 ~ 38317804 (+)
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding downstream 38157 38325685 ~ 38339014 (+)
AMCG00010654 enoph1 coding downstream 87931 38375459 ~ 38378170 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding downstream 159775 38447303 ~ 38458936 (+)
AMCG00010661 NA coding downstream 180844 38468372 ~ 38474161 (+)
G82234 NA non-coding upstream 128981 38156397 ~ 38156598 (+)
G82231 NA non-coding upstream 175024 38110249 ~ 38110555 (+)
G82230 NA non-coding upstream 188293 38097026 ~ 38097286 (+)
G82229 NA non-coding upstream 189677 38095621 ~ 38095902 (+)
G82228 NA non-coding upstream 191865 38087393 ~ 38093714 (+)
G82285 NA non-coding downstream 135952 38423480 ~ 38425049 (+)
G82338 NA non-coding downstream 187322 38474850 ~ 38475108 (+)
G82339 NA non-coding downstream 189691 38477219 ~ 38483324 (+)
G82353 NA non-coding downstream 270938 38558466 ~ 38564283 (+)
G82468 NA non-coding downstream 739556 39027084 ~ 39027418 (+)
AMCG00010648 NA other upstream 33569 38247021 ~ 38252010 (+)
G82236 NA other upstream 116048 38169156 ~ 38169531 (+)
G82192 NA other upstream 397416 37886220 ~ 37888163 (+)
G81987 NA other upstream 1021530 37261324 ~ 37264049 (+)
G81971 NA other upstream 1034410 37230428 ~ 37251169 (+)
AMCG00010655 NA other downstream 60750 38348278 ~ 38353962 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other downstream 80141 38367669 ~ 38372651 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 348948 38636476 ~ 38640125 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 494551 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 955329 39242857 ~ 39248625 (+)

Expression


Co-expression Network