G82252


Basic Information

Item Value
gene id G82252
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38285755 ~ 38287535 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102612
TAACCTTtattgaacaataaaataaaataaaataaaataaaataatggatgtGCGGACAAATACTACCATAAGAAATGTATGTTCCTCCCCCCACCAAACAATACATCTGCGGCCATAGCTACCTGCTCTCTTGacttcttttgttttaaatgagcaATGATGGAATGATGGCGTTCGTCTTCGAAGATCAAAGAGCACTTCTACGGTAATTAAGttacaccccccacacacacacattgcaaaatacaaaagtctTTCCGCTGCACCGGTCGTGAGCGTGTGTGTAAGAAAGCACACTGATCTTGCGCAGATGTGGATAATGTTGTTTTGGGAGCTGTAAGGAACGGAATGGATGGATCGACTGCGGAGCTGCGCAGGCGCCCCACAAAGTCACTTTCCCACTATGTGTGCGAGTGAACAAAATGTCCAGtttcaagtcttttttttttttttttaatctttttctttcgTCAGCATGCATGCAGTTAGGGTCCATATAAGCACCTTTATATCTGAGAATGTAGCACcgattttttctgttttttttttggaccgGACTAACTGTTgacatgcaaaatgtaaaaactttgAATTTTGGAGAAAATTACCCTACATGTTGCAACCAACAAACACTACAAGGCAATTAATGAATATTCATACAGTACCAAACATGTAGAACATGACctaatacagtacacacattaaAGAAAGTGCTAGTTTACAGAACAATTGCTTTCTCGTTTAAGCCTTCTAATATTTTCTAGGACTATAAGAGGACAAGCTAATGTAGTACACAATCATTTAACCCCAAAATACACTTAAACATCTCTTTTTcaccaccatttttttttatcattatcaaACACTTATATTTCTAAATTCCCACTGTTGCAACAAAGCCGTGACAAACGCAAAGCAAAGggaaaacaaaccagcaaaGGAAGCGTCTTCGATACCCATACTTATACAGCTAGCTATCTACATTACTATCAGCTCAGATacaggtttgtttttgaaaaaaggCCTAAggctttaaaaagtaaagtctGCACTCGTTTTAAACAGGTCAAACTCCTTGCCATCCCATTCGTTTTAACCTTAACTGATTGTACTGCGTTCTGATGAGGTTTGAATGACGTTTTTATGATGTTAAGACAGCCGTCCAGACATTCACTCTGTTCTGCTCGGTGAAGAAGAGGAGCAGTATCTCTCCGATGCTTTTCGTCCTGTCTGTAATTGACTTGCACTGTTCGGGAAATATCCACATCAGTCCCCACTCAAAGCATTATTAAAGAAATGCACATCTCACAAACCAACTTAAATGTTACAATCGACTCAAAGTCGTGGCAATAAGGCTCTTGGTGGGGAAATGTGTTTTCTACACGACAGCAGCTTGTCAAAGCACTCCTGTCCCGGCAATAAATTCAGACATTTTTAATGACTTGttctgtcaaaaacaaaaactctgtTGTGGATTTTTCAGGTAAATGGGATATGCTAGACTGTGAGCCTTAGGTTACAATTTATAGAGGTAAATTGTAagagttaaacacacacacaaaacaataacccATTTTTGTTGAGtgagcaaaacatttaaaatactaccACAAACATGAGGGCACAACAAAGGATGTCTTCTGTGTAGGTGTAGCCCTGGCTTCTGAGAATACATACAATACTCAGATCACAGCTTTAAACCTTGAACTGGAAAAGCAGAGCAAACTGAGTGCAAATCCTCTCTGCATGATGCAGGTGGAAACCTGTTGCGATCAGCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102612 True 1781 lncRNA 0.39 1 38285755 38287535

Neighbor

gene id symbol gene type direction distance location
AMCG00010649 NA coding downstream 8988 38253115 ~ 38276767 (-)
AMCG00010651 NA coding downstream 48048 38222463 ~ 38237707 (-)
AMCG00010647 NA coding downstream 128331 38148135 ~ 38157424 (-)
AMCG00010646 LOC101066920 coding downstream 148551 38135266 ~ 38137204 (-)
AMCG00010645 NA coding downstream 172583 38087401 ~ 38113172 (-)
AMCG00010657 NA coding upstream 48501 38336036 ~ 38343554 (-)
AMCG00010659 mat2al,LOC100699062,LOC102202437,LOC101466580,LOC102780929,LOC107732036,LOC103371477 coding upstream 56586 38344121 ~ 38346861 (-)
AMCG00010658 hnrnpd,LOC102781216,LOC102314153 coding upstream 68888 38356423 ~ 38370024 (-)
AMCG00010668 LOC107558253 coding upstream 92992 38380527 ~ 38385701 (-)
AMCG00010663 scd5,LOC106562327,LOC106568335 coding upstream 98997 38386532 ~ 38401883 (-)
G82126 NA non-coding downstream 787642 37497718 ~ 37498113 (-)
G82125 NA non-coding downstream 791042 37492723 ~ 37494713 (-)
G82020 NA non-coding downstream 925933 37357333 ~ 37359822 (-)
G82017 NA non-coding downstream 929552 37355758 ~ 37356203 (-)
G82002 NA non-coding downstream 1002440 37282917 ~ 37283315 (-)
G82347 NA non-coding upstream 231130 38518665 ~ 38526795 (-)
G82362 NA non-coding upstream 338991 38626526 ~ 38626937 (-)
G82435 NA non-coding upstream 516291 38803826 ~ 38828301 (-)
G82436 NA non-coding upstream 532971 38820506 ~ 38820945 (-)
G82469 NA non-coding upstream 739526 39027061 ~ 39027421 (-)
AMCG00010623 NA other downstream 877606 37405880 ~ 37408149 (-)
AMCG00010602 NA other downstream 1601937 36677697 ~ 36683818 (-)
AMCG00010597 ercc8 other downstream 1644062 36627901 ~ 36641693 (-)
G81716 NA other downstream 2569083 35714951 ~ 35716672 (-)
AMCG00010532 ppic,LOC107713556 other downstream 4181083 34098346 ~ 34104672 (-)
AMCG00010666 NA other upstream 135944 38423479 ~ 38425067 (-)
AMCG00010664 NA other upstream 170239 38457774 ~ 38465061 (-)
AMCG00010667 NA other upstream 189375 38476910 ~ 38483422 (-)
AMCG00010679 ppwd1,LOC107558664 other upstream 347524 38635059 ~ 38636502 (-)
G82392 NA other upstream 367383 38654918 ~ 38688260 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G213134 NA non-coding NC_048566.1 CM023220.2 102361315 ~ 102368565 (+)
mexican tetra (Astyanax mexicanus) G178672 NA non-coding NC_035916.1 CM008319.1 23467858 ~ 23475206 (-)