G82285


Basic Information

Item Value
gene id G82285
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38423480 ~ 38425049 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102649
TCGAGTAGGTTTGTCACCACTGACGGCATTTTATTCCAGGGCACATGACATCAGATCTCAGACACTACATTAGCCAACTACGCAGCAGTGCGACTTCCTCCAGTCCCGCCCTTCTTCACACCGATACCCCGCGTCCGCAGTCAGGATCGGGCGCCTCCGTGATCCACACCGACCCTAGAAGGGAACATGCAAAATTATCTCGTTACTTACAATACAAATTGTGCACATCCTATCCATTAGCACCACATTTGCACAGCTCACCAATTCTAACCTTACAAAACAGATGgtcatgttaaatatatgcatCAATCTGCAAAACTAGCAGAGGCTCAACTTCAAATGCACCTAATCAAGTACAAGTCACCCCACACTAGACGGatgtgatgcattttattgCACCAGACTATATGAAGTCCTGCCCCCCCCTGGCCCTGTGGACCGGACCCTCATTCACACAGTGTCATCCTTCCCCTGGCAGGGTCAGATGGGTAGTGAGTGACAGTCATAATCACGGGGTCCTCTGTGGAGCACAAACGCAACTCTGCACAGCTTACCTGCTGCACAAACAGGACGGAAAGGGACAGCACTCTCGCTTCCGCTCAGCTCAGCATGCGGACCAGTCGCGCCGCTGCGCCGCCGCCGTGCTTTTCGCATTTTGAGGTTCAAATCTCCCGCCCCGTCGACAGGCTTTAAGGGTCGCCTTTCTGCCGCGGCGGCCTCTGCTGTATAGAGGCCGCCTGGTCCCGCCGCCCGAGCGCCGCCATTCCCGCTCCTCCACAGAGCAGCGCCAAAGAGACGGAAGAGCCGCCTGGAGCAGCTTTATATGGGCGGCGCAGAGCATGACGGGTACCGACGACAGCAGCGCTCCGTTTCCTTCAACAGGGGGCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102649 True 890 lncRNA 0.55 2 38423480 38425049

Neighbor

gene id symbol gene type direction distance location
AMCG00010654 enoph1 coding upstream 45310 38375459 ~ 38378170 (+)
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding upstream 84466 38325685 ~ 38339014 (+)
AMCG00010652 NA coding upstream 105676 38306254 ~ 38317804 (+)
AMCG00010650 NA coding upstream 145111 38277317 ~ 38278369 (+)
AMCG00010643 NA coding upstream 372533 38043745 ~ 38050947 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding downstream 22254 38447303 ~ 38458936 (+)
AMCG00010661 NA coding downstream 43323 38468372 ~ 38474161 (+)
AMCG00010670 NA coding downstream 59072 38484121 ~ 38487527 (+)
AMCG00010671 NA coding downstream 62640 38487689 ~ 38488286 (+)
AMCG00010669 NA coding downstream 90888 38515937 ~ 38534810 (+)
G82250 NA non-coding upstream 135952 38285579 ~ 38287528 (+)
G82234 NA non-coding upstream 266882 38156397 ~ 38156598 (+)
G82231 NA non-coding upstream 312925 38110249 ~ 38110555 (+)
G82230 NA non-coding upstream 326194 38097026 ~ 38097286 (+)
G82229 NA non-coding upstream 327578 38095621 ~ 38095902 (+)
G82338 NA non-coding downstream 49801 38474850 ~ 38475108 (+)
G82339 NA non-coding downstream 52170 38477219 ~ 38483324 (+)
G82353 NA non-coding downstream 133417 38558466 ~ 38564283 (+)
G82468 NA non-coding downstream 602035 39027084 ~ 39027418 (+)
G82488 NA non-coding downstream 677871 39102920 ~ 39103266 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other upstream 50829 38367669 ~ 38372651 (+)
AMCG00010655 NA other upstream 69518 38348278 ~ 38353962 (+)
AMCG00010648 NA other upstream 171470 38247021 ~ 38252010 (+)
G82236 NA other upstream 253949 38169156 ~ 38169531 (+)
G82192 NA other upstream 535317 37886220 ~ 37888163 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 211427 38636476 ~ 38640125 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 357030 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 817808 39242857 ~ 39248625 (+)
G82671 NA other downstream 1423897 39848946 ~ 39849369 (+)
G82723 NA other downstream 1622037 40047086 ~ 40049815 (+)

Expression


Co-expression Network