G82339


Basic Information

Item Value
gene id G82339
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38477219 ~ 38483324 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102752
TCGAGACCCAAAAACATAAGGGTCTGTCAGATACAAAGCAGAGAAACCTACACTGGACACAAGCAAATCAAAGTTCAGAGTTCATTCATGTTGACTTTCCAATAAAGCTACAAAGGACAATGAAATCATAAAAAACTGGGACACATTGACCCAAACCCTGAGAAACACTAAATATTTGGTCTTCTTATATCAAACTTCCCCAATAGACAACGGCTGGCTGCATTCGGCACGTTGTCCTGTAAAACCCCATCTGTATGCTTGCATTAAACCGGACAACTCAAACTCAACAGATAAAATTACTCTTTGGCGATTCGTACGTCATGACTGTTGAGGGCTCTGACCTGTACTGCCTTGAAATGAAGTTCACTTTAACTCAAACCTTTtacagagacagaaaacagcatTCCAGAAATGCCACGAGTATGACATTTTCATCCATCTTGATCAGGGCAAAGGCCTTccaataagtaaaaacaaataaaactaaatctgtatgaaacaacgttgtttttGGAGGGGGACCATTCCCAGGTAATTACGGCCGTTCGATCTAGGAGCTCTAGAATGTGAGGGGGGTGGGGACGGAGATTCAGGAAACAACTGCTGAGGGCGTTTCACTTTTATTCACATATTTACAACATCTGCCACCCAAGTGTTGAGAAAGATCTTATGCATTAACAggaatgtctttaaaataatgacaagaaaatgaaataaagcatgtacaacccccccctcccccgatGCGGCGCGCACCCCCTCTGTCCCGGCGGGGGGGGCTGAGTCCAGACCCACAGCCGCACTAGCTGCTGTCCGAGGAGGCGCTGGAGCTCTCTGACGAGGTGCGGCTGCGCTTCTTGCTCTTCTTGCCCTCCTTCTTGTGTCGCTTCTCCTTCTTGTGCTTCTTCTCCCGCCTGGTTTTCTTCTTGTGGGATTTCGGCTTCTTCCTCCTGGGCTCCCCCTCTTCGTCGCTGGACGTGCACGACCTTTTCTTAACTTTTTGTGGGAAGATTTTTCCTTGCTTTTCTTCTTGGGATGTCCTTTCTTCACGTCTTCTGATGAACCCTTGCTGGCGGCGCCGGGCTGCACTCTCTCGCTGTCCGGGTCGCCCTGCGGCTCCTCCTCGCTCTCCTCGCTGCTGGTGCTGCTCACGTCCAGAACAATGTCCTTCCCAGGATCCACCCGCACGAAGTTACGGCACTCGAACGTCAAGTGGCCAGGGTATCCACATTTCTTGCATCCTGCTCTAATATTATCCTTGTTCGGACctatgaaaaaaagaaaaagattgaaTGTGAAACGATGCATTTTTCTCAGAACGTCTCAGTCTCCGAATGAAAAGCTTTCCTTTAtgacaaaaagaaacattttccaaTAGTACTTAGTCAATAAAGGGGACTTAACACGACATCCCACGAGGGTAATGAACCTGCCCGAGACGGAGAAAGAGAGCGGACGGGAAATTCCTGTCTGATTGAATTCCAGTTGCTATAGAGATGTGCTACCCAGACATTTTAgggacagaaaaataataagaacaataattaaaaaaacagtccaGAAGAGTCTGGGTCGAAATCAAATTTTCACATATCAGTTGTAGCCTTTTTGAACCACTACCCAATCCTCGCACCCAGGGCGACCACAGGCACTAAGGAAATCTTCCAATCCATATCAGTACATTtgccaaaaaagcaaaaacatctATGACAGAAACAGAAGGCTTTCCAAACACATTCAGAATAGTGATCCAAGCGCACGCCACATCTATTTACTTATtacctatatatttaaataagacgAGGCTTTggactgtattttatattattttgcgATTGATTGACAGACATATGCAACTATGCCATTATGTTGTTATGTGTTTTCATGTATCCACACTTGCTTCAAAAAGAATATCCCTTGGGCATAATAAAGTTGATCTAATCTAAAGAAATCGAATCAGTTTACAGAAGAAACTATCTGTGTGACAAAGGGAAAGGGCTCTGAGGGCTCAGCTGGCAGTAATGCATGTTAAAGATACCAAGAGTGCTGTTACTACCAGGGATAGAAGaatattgtaaaattaataGAGCTCTGATGAAAAGaaacagtttaaaacacaacacagtttattaatttgacaaatcattaaaaaatgaatccaTAGTATTCCACCGTTGTACCTCATTATCTATCCGTGTAATTATTTACTGCCTTTTGCTTCTCTAGGGTAGGGGTTCCCAAATCAGTCCTGGAGGatgccctgtcctgctggtttttgttccagctgtgatcttaattacataatgtagccttgcattggattgttagttcaattaaggtttcaattaagcaTTTAAGATCTCATTTGGAACAAGAACCATCAGGACAGGGGGTCCACCAGGACTGATTCGGGAccgattcgcacacactactctgctccctccactggctcccgatagcggcacacattcagttcaagacactgaccctcacctaccgctgtctcgaccccactgcaccaagctaccttcagacactcgtctctccatacatcccctccagaccactgcgctcctccagcgccagaagactaactctgcctcctctccactctccctcctccagagccgctccttctcatccctgaaccctatgtggtggaacaacctgcccacagcagagtccctgacctccttccggcgcttactcaagacacatctcttcagacagtacttataatattagtccttttaatccccttaagatagcacttcacagttttattatgcttcttgcgtttttgattgttttgctccttgctccctttcccacagcccttgactgtgactctacatcttgacaggacttagcttttaccgtccaggatgtaggacctcacttactttacttgcctgtgtaaattggaagttgtaaaatgtattatattttgaattgctatgttttatgtaaactgaatttgtaatgtttgatgcctttacctaactgtatttttgcacttatgttgtaagttgccctggataagggcatctgacaagaaataaaaattaaaataataataataataataataataataataatctagggTAGGGGTTCTTAACCTGGGGTCCATGGACAATcatataaatgattaaaagcAGCTCCCAAATAACAATTGATCATCACAAATCCAGGTGTTCCAGAGGTTCTGATAACTGGGAGCTCACATGGATTTGTTCTTTTTCCGAATTTGActtattgttttcctcctgcGATGATCACTCCAGAGAGGCCGCTGACGTTTCAAAGTTACAGATCATCAAAACTAAGTCCTGTAACCGGCTGTTGCAGCCCACGCTCTGCTCCTCGGTCCCCTGCcctggcagcagcagcaaccaTCTCCATGAGCGCAgagatgctttttaaaaaggaaaaatcttAGCCGCGCTGGACTTGATCGGTTTCCTGGTGGAGCAGAGGAAAGTTTTTGAAAATAACTATCCCGAGGACTTGTTTCCTTACTTTGTACAGGTGCCTGCCATGGTCTATCTTGGGTGGGGGTCTGGAGGGGTACGGAAAGGTTAAGAAGCCCTGCTCTATGTGTCCAAGGAAAGGGTTATTTCCTCAAAGAATGAAAgccaaaatgtgaaaaaacacacacaagtacatTCCCATGACGGGTGTTAAAATCCCTCATGAATGAACTGAACACAATCTATCCAGCCCAGTGGTTCTCAATGCTGGGGAGCCCCTGCTTTCTGCTCTAGCCGAGCTCTCAATCACTTCATTACTAGTAGAGTACTTAAGGGAGccctaattgaactaattagCCTAACCTGAGatcttacattattttaaacagttgtagtTTTCATGTTCAGTATGAAACTATAGTggaacttgaaatctccaacttttattaaactacacaatttaaaaagtcaaacgTCGCAAATCAGGAattcaattaaggaatcaattaagtGAGAGCTCAGCTGAGCGAAAGCCCCGGGCAGGGGGTGTCTCCTCCCATACACCGGACACTTTCACGAGTCGACCACTGTTTCACACACGATGCGCACAACGCACGGCCAGGTCTGTGGCTGTAAGATGAAGCCACATCAgtctctgtccgtctgtccgcCGTGGACCTCATGTCCGATCTCTTTAACGTCGCCAAATCGCCGAGTGCATTGAGATCGAGATTGAGTCGGTTTCCCCGGCGGGTCTGGACACGTTTATAACCCGGGCAGGAAGCGTGAATTAACCGTCCAGAGCCGCGCAGGGAAACCGCTCACATCCCCATCCAGCCCTCCGGACGTTTCTAGCACATTCTCTTAGATGCGCTGATTCCCACCCGCGTTTCGCGCATGTATGTTTGCACTCTTAGCTAATTTCCGCACAAACGTATTACTGTTGTTTCAATCGTGACATAAAAACCTGGTGCCGCCATGCCGAGCGCCTCCGTTAAAGCCCAGAGTCGATGTTCGGCTCAGTTCGGTGCGAAACGCATTCaaacactttcaaaacttccagCAAGGGTCCATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102752 True 4549 lncRNA 0.45 4 38477219 38483324

Neighbor

gene id symbol gene type direction distance location
AMCG00010661 NA coding upstream 3058 38468372 ~ 38474161 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding upstream 18283 38447303 ~ 38458936 (+)
AMCG00010654 enoph1 coding upstream 99049 38375459 ~ 38378170 (+)
AMCG00010653 ppp2cb,LOC107758729,LOC105021738 coding upstream 138205 38325685 ~ 38339014 (+)
AMCG00010652 NA coding upstream 159415 38306254 ~ 38317804 (+)
AMCG00010670 NA coding downstream 797 38484121 ~ 38487527 (+)
AMCG00010671 NA coding downstream 4365 38487689 ~ 38488286 (+)
AMCG00010669 NA coding downstream 32613 38515937 ~ 38534810 (+)
AMCG00010672 ppwd1 coding downstream 148480 38631804 ~ 38633945 (+)
AMCG00010673 trappc13,LOC107667267 coding downstream 169561 38652885 ~ 38661453 (+)
G82338 NA non-coding upstream 2111 38474850 ~ 38475108 (+)
G82285 NA non-coding upstream 52170 38423480 ~ 38425049 (+)
G82250 NA non-coding upstream 189691 38285579 ~ 38287528 (+)
G82234 NA non-coding upstream 320621 38156397 ~ 38156598 (+)
G82231 NA non-coding upstream 366664 38110249 ~ 38110555 (+)
G82353 NA non-coding downstream 75142 38558466 ~ 38564283 (+)
G82468 NA non-coding downstream 543760 39027084 ~ 39027418 (+)
G82488 NA non-coding downstream 619596 39102920 ~ 39103266 (+)
G82495 NA non-coding downstream 668483 39151807 ~ 39152153 (+)
G82520 NA non-coding downstream 733503 39216827 ~ 39217078 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other upstream 104568 38367669 ~ 38372651 (+)
AMCG00010655 NA other upstream 123257 38348278 ~ 38353962 (+)
AMCG00010648 NA other upstream 225209 38247021 ~ 38252010 (+)
G82236 NA other upstream 307688 38169156 ~ 38169531 (+)
G82192 NA other upstream 589056 37886220 ~ 37888163 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 153152 38636476 ~ 38640125 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 298755 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 759533 39242857 ~ 39248625 (+)
G82671 NA other downstream 1365622 39848946 ~ 39849369 (+)
G82723 NA other downstream 1563762 40047086 ~ 40049815 (+)

Expression


Co-expression Network